Nematolebias whitei (Rio pearlfish): 119414956
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Entry
119414956 CDS
T08042
Symbol
col6a1
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh04510
Focal adhesion
nwh04512
ECM-receptor interaction
nwh04518
Integrin signaling
nwh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119414956 (col6a1)
04518 Integrin signaling
119414956 (col6a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119414956 (col6a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119414956 (col6a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nwh04147
]
119414956 (col6a1)
00536 Glycosaminoglycan binding proteins [BR:
nwh00536
]
119414956 (col6a1)
Exosome [BR:
nwh04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
119414956 (col6a1)
Glycosaminoglycan binding proteins [BR:
nwh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119414956 (col6a1)
Hyaluronan
Extracellular matrix or blood plasma proteins
119414956 (col6a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
DUF1194
Motif
Other DBs
NCBI-GeneID:
119414956
NCBI-ProteinID:
XP_037538001
LinkDB
All DBs
Position
9:13805691..13838510
Genome browser
AA seq
1007 aa
AA seq
DB search
METLSGLLVLLCAFMAAAQAPNQRSRFAECPVDLFFVLDTSESVALRQKPPNFYIDQIKE
FTKRFIDELHEMRHECDRVLMWNSGALHYSDDAILVRELGDMNTGRNALKTAIDGIKYIG
KGTYTDCAIKRGLAELLIGGSHYHENKYIVVVTDGHPITGYKEPCGGVQEAANEARQHGV
KVFAVAISPDQEDTRLSIIATDHNYRQNFTAADDTRSTKIKTIRSIIDIITNETKDVCCS
FDCNAPGGPKGPDGETGAKGEMGRPGMPGEKGDIGPVGSVGDPGPVGYSGMKGDRGPRGD
KGERGHKGFKGDKGQRGMDGVDGRKGEHGFPGLSGCKGSPGSDGLQGEAGPKGDPGPYGK
KGEKGDPGKNGEPGRPGNYGPLGPRGEPGPRGPDGDKGERGDDGPSGTDGGPGERGQVGE
KGEQGSRGNRGPRGEPGDPGTRGEQGREGPTGPNGDPGEPGKSGAPGYRGDEGSLGSEGP
KGPKGIKGAPGDRGSLGPRGEDGVQGNGTAGCPGFQGYPGPRGDPGEPGGKGTPGPKGDD
GEPGDPGIDNNQPGPTGSKGAKGHRGPEGNPGPVGPPGPPGSDECEILDIIMKLCSCCEC
KCAPVDLAFIVDSSESIGATNFALAKDFIITVIDRLIKNHQVKFAANQSSVSVVQYSGSQ
AQEVVKLTSNLTGFKQAVRDLRWLAEATYTGEALEFALTATLKDMRKDNKVVLVLTDGRS
DIIRDKVPLNVLCGKGLVVGGLGVKDYSGRQPNQEQLQSVTCEADPKPGFSFVLDNFAEL
LNDNFLQNLTAKICQEKKCPDYKCPISFSEATDILVMMDSSASVGQKNFEISKTFVRRLA
ERFLAAERKGGARVRVGVAQYSRTPKMEQVPTANLTVLSSHIEEAAFQNDGTNVLEALGF
AVTSFRGRGDASSGGRKKLVLFSDGRSQRVTEALLEKRVREVADAGIELFVISAGSQVSE
ANLRMLVSRGRQDDISYAQRHLFRIPDYPSLLRGVFHQTVTRRVSLP
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atggagactctcagcggtctccttgtgctcctgtgcgctttcatggctgcagcgcaagcg
ccaaaccaaagatccagatttgcggaatgtcctgttgaccttttctttgtgctggacaca
tctgagagcgtcgccctcagacagaaacctcccaacttttatattgaccagatcaaggag
ttcaccaaacgcttcatagatgaactccatgagatgcgccatgaatgcgaccgtgtcctg
atgtggaactcaggagcgctgcactacagtgacgacgccatccttgtgcgggaactaggt
gacatgaacaccggccgcaacgccctgaagactgctatcgatggcatcaaatacatcggc
aagggcacctacaccgattgtgccatcaagaggggcctggcagagctgctcattgggggc
tcccactaccacgagaacaagtacattgtggttgtgactgatggccatcccatcactggg
tacaaagagccatgtggaggagtgcaggaggctgctaatgaagcccggcagcatggggtt
aaagtgtttgctgtggccatctcacctgaccaggaggacaccaggctgtctatcatcgcc
acagaccacaactacagacagaacttcacggctgcagatgacaccagatccaccaagatc
aaaaccattcgatccatcattgacatcattacaaatgagacaaaggatgtgtgctgctcc
tttgactgcaatgctcctggagggccaaaaggaccagatggagaaaccggtgccaaggga
gagatgggtcgaccggggatgccaggagagaaaggagatattggtcctgtgggcagtgtt
ggtgatcctggtccagttggctacagtggaatgaagggtgaccgtgggcccagaggagac
aagggggaaagaggacacaaaggcttcaagggtgacaaaggtcaaagaggaatggatgga
gttgatggacgtaagggtgaacatggtttccctggactttccggttgtaaaggttctcct
ggatctgatggtctgcagggagaggccggaccaaagggggaccctggcccttatggaaag
aaaggagagaaaggagatcctggaaaaaatggtgaaccgggacgtcctggaaactatggg
cccctgggccctcggggtgaaccaggccctcgtggacctgatggagacaaaggagagcgt
ggcgatgatggaccgtctggaacagatgggggacccggcgagagggggcaagtcggcgag
aagggcgagcaaggttctcgtggaaacagaggtccgagaggagaaccgggagacccagga
acacgtggagagcaggggagggaggggccaactggtcccaatggagaccctggtgagcct
ggaaagtctggagctcctggctacagaggagatgaaggttctctgggatcagaggggccc
aaaggaccaaagggaatcaaaggagctccaggagacagaggctcactggggcccagggga
gaagatggcgtccaagggaatggcacagccggctgtcctggttttcaggggtaccctggg
ccccgcggagaccctggtgagccgggtggtaaaggaactcccggacctaaaggagatgac
ggagagcccggagatccaggcatcgataacaatcaaccagggcctaccggatctaaaggg
gccaaaggtcacagaggacccgagggcaacccgggtcctgttggaccgcctggacctcca
ggatctgatgaatgtgaaattctggatatcatcatgaagctctgctcttgttgtgagtgc
aagtgtgcacctgtggacctggcgttcatcgtggacagctcagagagtatcggtgccaca
aactttgccctcgccaaagacttcatcatcacagttatcgacaggctgattaaaaaccac
caggtcaagtttgcagcaaaccagtcctcggtgagcgtcgtccagtacagtggatcacaa
gcccaggaggtcgtgaaactcaccagtaacctcaccggcttcaaacaggcggtgagagac
ctgcgctggctggctgaggccacctacacaggcgaggccctggagttcgctctgacggcg
acgctcaaagacatgaggaaggacaacaaagttgttctggttctgactgacggacgctcc
gacatcatcagggacaaggttcccctcaatgtgctctgtgggaaaggccttgtggtgggg
ggtttgggagttaaggactactcgggccgccagcccaaccaggagcagcttcagtccgtg
acgtgcgaggctgaccccaaaccaggcttctcttttgttctggataactttgctgagctg
ctgaacgacaacttcctgcagaacctcacagccaagatctgccaagagaaaaagtgccca
gactacaaatgtcccatctctttctctgaagctactgacattttggtgatgatggacagc
tcagccagtgtgggccagaagaacttcgagataagcaagacttttgtccgacgcttggcc
gaacgtttcctggcagccgagagaaagggaggtgccagagtcagagtgggcgtggcccag
tacagcagaacccccaaaatggagcaggtaccaactgccaatctgaccgtgctgtcttct
cacatcgaagaagcagctttccaaaatgacggcaccaacgtcttggaggctctcgggttt
gccgttaccagcttccgcggtcgtggggacgcatcttctgggggccgtaaaaagctggtg
ctgttttctgacggccggtcccagagagtcaccgaggcgcttttggagaagcgagttcgt
gaggtggcagatgccggcattgagctctttgtcatctcggccggcagccaggtgagcgag
gccaatctccgcatgctggtgagccggggccggcaggacgacatctcctacgctcagcgc
cacctgttccgcatccccgactacccctcgctgctccgtggggtcttccaccagaccgtc
acccgcagggtctctttgccctaa
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