Nematolebias whitei (Rio pearlfish): 119415084
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Entry
119415084 CDS
T08042
Symbol
slx1b
Name
(RefSeq) structure-specific endonuclease subunit SLX1
KO
K15078
structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
119415084 (slx1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nwh03400
]
119415084 (slx1b)
DNA repair and recombination proteins [BR:
nwh03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
119415084 (slx1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SLX1_C
GIY-YIG
T5orf172
FANCL_C
zf-HC5HC2H
zf-HC5HC2H_2
zf-RING-like
C1_2
PHD_NSD
Prok-RING_1
Motif
Other DBs
NCBI-GeneID:
119415084
NCBI-ProteinID:
XP_037538157
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All DBs
Position
1:complement(8649018..8653091)
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AA seq
261 aa
AA seq
DB search
MVVEVESFFGVYMLYCTNPKFKGRIYIGFTVNPERRIGQHNAGRHRGGAKRTSGRGPWEM
VLIIHGFPSDIAALRFEWAWQHPHSSRRLHHVARRVRKESSLQFHWRVVSNMLRVAPWSR
LPLTVRWLRQEYRMDFEPSLQPPLHVPITFGSVRAKKRQLLASVRDEETSKCFLCNRMVK
ASEKLSCFQPVCGMSSHLVCLARYFLRLEPTHLLPVEGKCPSCHRPALWGDLIRHKHGCF
QDLEEITLSSPQSHWADELQA
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atggtagtagaggttgaaagtttttttggcgtgtacatgctgtactgcacaaaccccaaa
ttcaaaggtcgtatctacattggtttcaccgtgaacccggagcggcggatcggacaacac
aacgccgggagacacagagggggagccaagaggaccagcgggagaggaccatgggagatg
gtgctcatcattcatggcttcccgtcagatattgctgctctgaggtttgagtgggcgtgg
cagcacccccactcctcccggcggctccatcacgtcgctcggcgcgtcaggaaggagtcg
agcctgcagttccactggcgtgtggtctccaacatgctgcgggtggcgccttggagccgg
ctgccgctgaccgtccgctggctcagacaggagtacaggatggacttcgagcccagtctg
cagccccccctgcacgtccccatcacgtttggcagcgtgagggccaagaagaggcagcta
ctggcgtctgtgagggacgaggagacctccaagtgttttctttgcaacaggatggtaaaa
gcctcagagaagctgagctgcttccagcctgtgtgtgggatgagcagccatctagtctgc
ctcgccaggtacttcctccggctggagccgacccacctgctgccagtggaagggaagtgt
ccatcctgccaccgcccggcgctgtggggggatctcatccgtcacaaacacggctgcttc
caagaccttgaggagatcacgctgtcgagtcctcagagccactgggcggacgagctgcag
gcgtga
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