Nematolebias whitei (Rio pearlfish): 119415236
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Entry
119415236 CDS
T08042
Symbol
copa
Name
(RefSeq) coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nwh04131
]
119415236 (copa)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nwh04147
]
119415236 (copa)
Membrane trafficking [BR:
nwh04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
119415236 (copa)
Exosome [BR:
nwh04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
119415236 (copa)
Exosomal proteins of bladder cancer cells
119415236 (copa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
TPR_COPA_B
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_RFWD3
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
119415236
NCBI-ProteinID:
XP_037538329
LinkDB
All DBs
Position
9:44573686..44589461
Genome browser
AA seq
1222 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWVLASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVETD
VRGITGVDLFGASDAVVKHVLEGHDRGVNWAAFHPSMPLIVSGADDRQVKIWRMNESKAW
ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAH
PNLNLFAAGHDSGMIVFKLERERPAYAVHGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSG
SKFPVFSMSYNPAENAVLLCTRATNLENSTYDLYTIPKESDSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDADGVTLFDVQQK
RSLATVKIAKVKYVVWSSDTSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGV
FIYTTSNHIKYALTSGDHGIIRTLDLPIYATRVRGNSVYCLDRECRPRVLTIDPTEYRFK
LALVNRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEV
ALEAAKALDERSCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLAKLRKMM
KIAEIRKDMSGHYQAALYLGDVSERVRILRNCGQKSLAYLTAATHGLDEEAEALKETFDP
EKETVPEIDPNAQLLQPPPPINPLDTNWPLLTVSKGFFEGAIPAKGKAGQMAADLDMEAA
GGEGWGDDAELTMDEDGFIDAQDGLGDEGMGKEEGGGWDIDEDVELPPELDVPMGAGGGA
EDGFFVPPTKGMSPTQMWCNNSQLPVDHILAGSFETAMRLLHDQVGVVNFDPYKSLFMQT
FSRGRTCYLGLPSLPCLRSHPHRNWKDCGAKQGLPAVGLRLSDLISRLQQCYQLTTSGRF
EEAVERFRAVLLSVPLLVVDNKQEIAEAQQLLTICKEYIVGLSMEVERKKLPKETLEQQK
RICEMAAYFTHCNLQPVHMVLVLRTALNLFFKLRNFKMAAGFARRLLELGPKPDVAQQTR
KILAACEKTLTDTHQLNYDPHNPFDLCAASFVPLYRGRPVEKCPLSGACYCPPYKGQICR
VTQVTEIGKDVIGLRVSPLQFR
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgttaacgaaatttgaaacgaagtcggcccgagtcaaaggcctgagtttccatcccaaa
aggccatgggttcttgcaagtttgcacaacggtgtaatccagctgtgggactatcggatg
tgtacactgatcgacaaatttgatgagcatgatggtccggtcagaggaattgatttccat
aaacaacaacctctttttgtgtctggaggagacgattataaaataaaggtgtggaactac
aagctgagacgttgcctcttcacccttctgggccacttggactatatcagaactactttc
tttcatcatgaatatccctggattctgagcgcgtcagatgatcagaccatccgcatttgg
aactggcagtcgaggacttgcgtatgtgtgctcacgggacataaccactatgtgatgtgc
gcccagtttcacccatctgaagacctggtcgtgtcagccagtctggaccaaaccgtgcga
gtgtgggatatctctggtctgaggaagaagaacctgtctcccggcgctgtggagactgat
gttcggggcatcactggggttgacctgtttggtgcctcggatgctgttgtgaagcacgtc
cttgagggtcatgaccgtggggtcaactgggccgccttccaccccagcatgcctctcatc
gtgtctggagccgacgacaggcaggtgaagatctggaggatgaacgaatccaaggcgtgg
gagcttgatacgtgccgtggtcactacaacaacgtgtcctgtgcggtcttccacccacgc
caggagctcatcctgtccaactctgaggacaagagtattcgtgtgtgggacatgtccaag
aggaccggggtgcaaacctttcgccgtgatcatgatcgcttctgggtgctgggtgctcac
ccaaacctcaacctgtttgcagcaggtcatgacagtggtatgattgtgttcaagctggag
cgtgagcgtcctgcgtatgctgttcatggcaacatgttgtactacgttaaagatcgcttc
ctccgtcagctggacttcaacagcagcaaagacactgctgtcatgcagctccgcagtggt
tctaagttcccggtgttcagcatgtcctacaatcctgctgagaacgctgtcctgctctgt
actagagccaccaaccttgagaacagtacttatgatctgtacacaattcccaaagaaagt
gactctcagaaccctgatgctcctgaaggaaaaagatcttctggtctgacggcagtttgg
gtggcaagaaacagatttgctgtcctggaccgcatgcactctcttctaataaaaaacctg
aagaatgaaattgtgaagaaagtccaggtgccgagctgcgaggaaatcttctacgccggc
acgggttctttgctgctgcgcgatgccgacggcgtcacgctgttcgacgtgcagcagaaa
cgctccctggccaccgtgaaaatcgccaaggtcaaatatgtggtgtggagctctgacacc
agccacgtggccctgctggctaaacacgccattatgatttgcaaccgtaaactggagtct
ctctgcaacattcatgaaaacatcagagtgaagagcggagcctgggatgagagtggagtc
tttatttacaccacctccaaccacatcaaatacgccctcacttccggtgatcatggcatc
ataaggacattggacctgcccatctatgcgacccgtgtgagaggcaacagcgtttactgc
ttggacagagagtgccggcctcgcgttctcaccatcgacccgacagagtatcgcttcaaa
ctggctctggtcaatcgtaaatacgatgaggtgcttcacatggtgcgtaatgccaagttg
gtgggccagtcaatcattgcatacctgcagaagaagggctaccctgaggtcgctctgcac
tttgtcaaagatgagaagacacgtttcagcctggctctggaatgtggcaacattgaggtg
gcgctggaggcggccaaggctttggacgagcgcagctgctgggagcgtttgggtgaggca
gctctgctgcagggacaccaccaggtcgtggaaatgtgctaccagaggaccaagaacttc
gacaagctcaccttcctctacctcatcactggaaacttagccaagctgcgcaagatgatg
aagattgctgagatcagaaaggacatgagtggtcactaccaggcagctctgtatctgggt
gatgtgagcgagagggtcaggatcttgaggaactgcggacagaagtctctggcttacctg
actgctgccacacacgggctggacgaagaggctgaggcactaaaggagacctttgaccca
gaaaaggagacggtgccggagattgaccctaatgcacagctgctgcagcctcctccgccc
atcaaccctctggacaccaactggcccctgcttaccgtttccaagggcttctttgaagga
gccatcccagcaaagggtaaggcaggtcagatggctgcagatctggatatggaggctgct
ggaggcgagggctggggagatgatgctgagctcacgatggatgaagatggtttcatcgat
gcccaggatggattaggggatgagggaatggggaaagaagagggaggaggctgggacatt
gatgaagatgtggaacttcctccagaactggacgtgccgatgggagcaggtggaggagcg
gaagacgggttcttcgtaccacctactaagggtatgagcccgacccagatgtggtgcaac
aactcccagctgcccgtggaccacatcttagctggctcgtttgaaactgctatgaggctg
cttcatgaccaggttggagttgtgaactttgacccctacaagtccctgttcatgcagaca
ttctccagagggcgcacctgttacctggggctgccttcgctgccttgtctgcgtagtcat
cctcacaggaactggaaggactgtggggcgaagcaggggctgcccgcggttgggctgcgc
ctctctgatctcatttcccgcttgcagcagtgctaccagctgaccacatctgggcgcttt
gaagaagctgtggagcgctttagagccgtcttgctttctgttcctctgctggtggtcgat
aacaaacaggagattgccgaggctcaacagctcctcactatatgcaaagagtatatagtg
ggtctgagcatggaggttgagaggaagaagttgcccaaagagacattggaacagcagaag
aggatttgtgagatggctgcatatttcacccactgtaatctccagccggtccacatggtg
ctggtgttgcgcacggccctcaacctcttcttcaaacttcgcaacttcaaaatggctgca
gggtttgcacgacgcctcctcgagctcggcccaaagcccgatgttgctcagcagacccgc
aaaattttggctgcttgtgagaagaccctgacggacacccaccagctgaactacgatccc
cacaatccttttgatctgtgtgctgcctctttcgtccccctgtaccgtggacgtcctgtt
gagaagtgcccactgtctggagcctgctactgtcccccttacaaaggccagatctgcagg
gtcacacaggtgacagagatcggtaaggatgtgattggcctgcgtgtgagtccactccag
ttccgctaa
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