Nematolebias whitei (Rio pearlfish): 119415845
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Entry
119415845 CDS
T08042
Name
(RefSeq) PDZ domain-containing RING finger protein 4-like
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nwh04121
]
119415845
Enzymes [BR:
nwh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119415845
Ubiquitin system [BR:
nwh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
119415845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Siah-Interact_N
Motif
Other DBs
NCBI-GeneID:
119415845
NCBI-ProteinID:
XP_037538949
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Position
10:35503168..35601799
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AA seq
763 aa
AA seq
DB search
MGCNLCSLQKREEHYRLLYEIAQVNGKELSKSSHEETVEAFRAAKDPVVVQVIRRTPSGR
PHGLPQEIHVVDVCTQTDITFEHIMALAKLRPSTPPVPDVCPFLLSDSCHSLHTMEQDYY
DGTDYLSPVPADGERMEEFEYEEIELCRLSSQEKLGLTLCYRTDEEEDVAIYVSEVCPNS
IAARDGRIREGDRILQINGQDVQDREEAMAALSSDDCRKIILLVARPEMQLEEAWLDDEH
SEFLEQLKMEMLEEQQREEMELAVLQEEQEKQQREDDDRPTCSTLPYYKDSVRSLKDRMD
SSDHNVLAKIQRRLSRCLRDSQDTRCSTSSTRLEDREDEDIDETEGDRFQQLLELKCQIR
NSGEYDLFYSRRSTIECNMAEQNDVQHELQMLNEELRSIELECQNIMQAHKLRKGQQSPL
TERSAPSVKNQSPNRGESTKGKLVDINGRLEKSDKDSSSAYNTAESSRSTPLAMDRSPEH
SLQRVVSLTNQRNLCSGLAAGHSLSPSPIPACRAPVPGKGSSPDHSNASETDETPQAEKD
SEGKLKQCTSRIPYFSPSHNSQQRQANIPAHARHYQSYMQLIQQHSAVEYAQSQLSLLSV
CKEPQRPSNEPKMEWKVKIRSDGTRYITKRPVRDKILRERALKIKEERSGGMTTDDDAMS
EMKMGRYWSKEERKQHLVRAKEQKRRREFMQRSRLESLKENPQSSSEGRKEVSIIELSHK
KMLKKRNKKILDNWMTIQELMTHGTKAPEGAKVHNAFLSVTTV
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatttgtgcagtttacagaagcgagaggaacactacaggctgctgtatgag
attgcacaggtgaacgggaaggaattgtccaagtccagccatgaggagactgtggaggcg
tttcgagctgccaaagaccccgtcgtggtgcaggtcatcagacgtactcccagcggtcgc
cctcacggtctccctcaggaaatccatgtggtggatgtatgcactcagaccgacatcacc
tttgaacacattatggcgctggctaagctccggccatcaacccctcctgtgcctgacgtc
tgtccctttctactctctgatagctgtcactctcttcacacgatggagcaggattactat
gatggaaccgattacctctcccctgttcctgctgatggagagaggatggaagagttcgag
tatgaggaaattgagctctgtcgactcagcagtcaagaaaaattagggctcactttgtgc
tatcgaacagacgaggaagaggacgtggccatctatgtcagtgaagtctgtccaaacagt
attgctgccagagatggacgcatccgagagggggatcgtattttacagattaatggccaa
gatgtacaagacagagaagaagcgatggctgcactgtccagtgatgactgcaggaaaatc
atactactggttgcgagacctgagatgcagctggaggaggcctggctggacgatgaacac
agtgagttcctggagcagctgaagatggaaatgttggaggagcagcagagagaggagatg
gagttagctgtcttacaagaggagcaggagaagcagcagagagaagacgacgacaggccc
acctgttcaactcttccttactataaggacagcgtgcgaagtctaaaagacagaatggac
agctcagaccataatgtcttggccaaaatccaaagacgtctttctcgatgcctgagagac
agtcaggacacacgctgtagcactagtagcactcggctggaggacagagaggatgaggac
attgatgagaccgagggtgatcgtttccagcagctcttggagctgaagtgtcagatacgt
aacagcggtgagtatgacctgttctacagccgccgcagcaccatcgagtgtaacatggca
gagcagaacgacgtacagcatgaactacagatgctcaacgaggagctgcgcagcattgag
ctcgagtgtcaaaacatcatgcaggcccacaagcttcggaagggtcagcagtctccttta
actgaacgttctgctccctctgtcaaaaatcaaagccccaatcgtggagagtccaccaaa
ggtaagctggtagatataaatgggaggctggagaagtctgacaaggacagttccagtgct
tacaacactgcagagagttcacgaagcacccctttggcaatggaccgctccccagaacac
tcactgcagagagtggtgagcctcaccaaccagaggaacctctgcagtggtcttgctgct
ggtcactcactgagcccaagccccatcccagcctgccgtgccccagtcccaggcaaaggc
agcagccctgaccacagcaatgcctctgaaaccgatgaaactcctcaggccgagaaggac
agcgagggtaaattaaagcaatgcacttctcgtatcccctacttctctccttcccacaat
tcccagcagaggcaggccaacattccagctcacgcccgccactatcagagctacatgcag
ctgatccagcagcactcagctgtggagtacgctcagagccagctcagcctgcttagtgtc
tgcaaagagcctcagagacctagtaacgagcccaagatggagtggaaggtcaagatccgc
agcgacggcacccgctacatcaccaagaggcccgtgagagacaagatcctgagggagcga
gccttaaagattaaagaggagcgaagtgggggaatgaccacggatgatgatgcaatgagt
gaaatgaagatggggaggtactggagcaaagaggagaggaaacagcacctggtcagggca
aaagaacagaagaggagacgagagttcatgcagcgcagtcggctggaaagtttgaaggag
aaccctcagagcagcagcgagggccgtaaggaagtcagcatcatcgagctcagccacaag
aagatgttaaagaagcgcaataagaaaattctggataattggatgacgattcaggagctg
atgactcacggtactaaagcccccgagggggcaaaggtgcacaacgcctttctttctgtc
acgactgtataa
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