Nematolebias whitei (Rio pearlfish): 119415900
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Entry
119415900 CDS
T08042
Symbol
tdrd12
Name
(RefSeq) LOW QUALITY PROTEIN: putative ATP-dependent RNA helicase TDRD12
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nwh03036
]
119415900 (tdrd12)
Enzymes [BR:
nwh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
119415900 (tdrd12)
Chromosome and associated proteins [BR:
nwh03036
]
Eukaryotic type
Gene silencing
piRNA pathway
119415900 (tdrd12)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
Helicase_C
Motif
Other DBs
NCBI-GeneID:
119415900
NCBI-ProteinID:
XP_037539000
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Position
10:complement(2867682..2906168)
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AA seq
1235 aa
AA seq
DB search
MLLPKYFFLSSGTRIRVALGDFLQLPYWARKFHLSRIKPTTLRVSVCEEKAELKPSSIWD
SSTTLYLHNLLQASTQTEAVLLELESDSTSIELYLTINNIKTCVNDDLVAKRFAYYSTHP
AGSNGLTGADWLPVRLSSSVLPQTASKSSNRHKAQTEEVSCDHTVTQQISDPVGAGDWQK
APSPPQSHLPELVTCDADSRSLVLTEVTDSNDRPRNSLEAAETKSDSSEDTDSSLAAALT
RNLSLFRFQKFLNPGSSYQDAPSDVAAFRQSPINGSPSLQNYLQTSRDLPSEAEHDLHSR
AGAEAGGTRRTEEARVCSSFLDWLNPESFNSAEAADDAISPSDPRMSGILVHSAHLEEPC
NNLEDAPITDVLRQVLRKKNYCTLSPADCYSWPAVARGYNTVIISNNAAQPISYLAPLLS
HIQLNSIFTSPTSSLGPIAVVLCPGWERAQVVYDMLEETKVYQILHPVVILLGVGKNEAK
AAKIPQNCLLLVTNPFTLVRLLSCHCFMFLRMYHLILDDAEELFALAPDQMETILQHFQK
VTCSEEQTSPSPKQLVAVAKRWTDHMESLIGSHMPSPYIIISVPEEAALYGNVQQAVLMT
VESSKVSSLLGVLDFRPAVGQKSLIVTNSAQEVEDVFKAVGNKSAFCLKTHEGLAHQFDL
VMEQWRKDIGPGTHVILVTTNDCLKCLGIKDATCLIHYGFPTSPKVFGNRLFCMSENFRN
MCEAVCSQYQPKGDSQLCRSVLLLSERNTSHVVGVLRYVKRTNALLPPELVAFAQGVHEA
REDQKVDRALCSYLKSFGFCRDSSVCPARHRFNIQLDQSVLPASGVIEVVPLYVKSASVF
CGRMVRKDDGRFDVMASEMASYYADKKPGAKELLEGGLYAVQEDEVFHRVKILSIPDYGD
SLFFSVPVIFIDVGKEVEVKSHQILQLPEQFQSLPGQAIEIIICRVKPADAEMNWHPKVT
RTISQKIQGLQHQARAVLSLGNTVFVDPMVRVTRVPGMKTSINEYNVQSEILNTGMAVSN
PEHLDQLRALCAAVVHATKDASVEKDSSSLEVGTKTEDTVRAAEDALTSTPNSPVSLKSS
TNHSTVEMPPLSVCDQNLKVHIQTSSQRDLDTAELTQRKLQTPSALQGSFLNCSFFCDRL
XGSVKGQVYKLDLQLHQKIAADLCHLEMKSCEPVLKLVKQRQGYWDQLVTNKNIFVSYNM
EHIDDEDKVLNGVGFVEDTGEDNWYVNSESGSESD
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgcctaaatatttcttcttgtcttctggaacaaggatccgggtagccctgggt
gatttccttcagttaccatactgggccaggaagtttcatctatcaagaattaaaccaaca
accctgcgagtgtctgtatgtgaagagaaggcggagctgaagccgtctagtatttgggac
agctctactacactctacctgcacaacttgcttcaagcgtctacacaaacggaagctgtg
ctgcttgaactggagtcagactccacttctattgagctctacctgaccatcaacaacatc
aagacctgtgtgaacgatgacttggtggctaagaggtttgcgtactacagcacacaccct
gctggcagtaatggtctgactggtgcagactggcttcctgtcaggctgtcctccagcgtc
ttacctcagaccgcctccaaatcatccaacagacacaaggcacaaaccgaggaagtctcg
tgtgaccacacggtaacacaacagatctctgatccggtgggtgcaggtgattggcagaag
gctccgtctccacctcagagccacctgcccgagctggttacctgtgatgcagacagcaga
tcgctggttttaacggaagtaacggattcaaacgaccgacccaggaacagtctggaagct
gcagagacaaaaagtgactcatcagaggacaccgactcgtctctggctgcagctctgacc
agaaacctcagtttgttcaggttccagaagtttctgaaccctggcagcagctaccaagat
gctccctctgatgtggctgccttcaggcagtctccaataaatggcagcccgtccctacaa
aactatttacaaactagccgcgatctaccaagtgaagctgaacatgatcttcacagcaga
gcaggagcagaagcaggcgggacgaggaggactgaggaggcccgggtctgttccagtttt
ttggactggttgaacccagaatctttcaactctgcagaagctgcagacgatgcaattagt
cccagtgaccctaggatgagtgggattctggtccactcagcccatctggaggagccctgt
aataacttggaagacgcgcccatcacagatgttctccgacaggtgttgcggaagaaaaat
tactgcactttgtctccagctgattgttacagctggccagctgtggctcgtggatacaac
actgtcattatctccaacaatgcagcgcagccaattagctaccttgcccccctcctctca
cacatccaactgaactctatcttcacttcccccacctctagtttagggccgatagcagtg
gtgctgtgtccaggctgggagagggctcaggtggtttacgacatgctggaggagaccaaa
gtttaccaaatcctccacccagtcgtcatcctgctgggcgtgggcaagaacgaagctaaa
gctgcaaaaattccacaaaactgccttcttttagtgaccaaccccttcactctggtccgt
ctgctgtcctgccactgtttcatgttcttacggatgtaccacctgattctagatgatgct
gaggagctttttgctcttgctcctgatcagatggaaaccatcttgcaacatttccagaag
gtgacttgcagtgaggagcagacgagtcccagtcccaagcagcttgttgcagtggcgaaa
cggtggaccgatcacatggagagcctgataggcagtcacatgccttcaccatacattatc
ataagtgttcctgaagaagctgccctctacgggaatgtacaacaggccgtcctcatgaca
gttgaaagcagcaaggtgtcatcactgttgggtgtgttggatttcaggcctgctgttggt
cagaagtcgttgattgtaacgaactccgctcaagaggtggaagacgtgttcaaggctgtt
ggcaacaaatcagccttctgtctgaagacccatgaaggactggctcaccagtttgatctt
gtgatggagcagtggaggaaggacattggtcctggcactcatgttattctggttaccacc
aatgactgtctgaagtgtcttggtatcaaagatgcaacttgtctcatccactacggattt
cctacctctcccaaagtgtttggcaacagactcttctgcatgagtgaaaacttcagaaat
atgtgtgaagcggtttgctcccagtatcaaccaaagggggactcacagctctgcaggtcc
gtcctgctgctttcagagaggaacacctcccacgttgttggagttctgcgctacgtgaag
cgaaccaacgccctgctgcccccagaactcgtagcctttgctcagggggtccatgaggcc
cgtgaagaccagaaggtggatcgcgccctctgtagctacctgaagagttttggattctgc
agagacagcagtgtgtgcccggctcgccatcgatttaatatccagcttgatcagtcggtg
ctcccggcatctggagtcattgaagttgtgcctctgtacgtgaagtcggcctcggtgttt
tgtgggcggatggtcaggaaggatgacggacgttttgacgtgatggcctctgagatggcg
tcttattatgctgacaagaaaccgggagcaaaggagctgctggaaggaggtttatatgcc
gtgcaggaggacgaggtcttccacagagtgaagatcctctcaatcccagattacggtgac
agcctgtttttttctgttcccgtgatcttcatcgatgttggaaaagaggttgaagttaaa
tctcatcagattcttcagctcccggaacagtttcagtctctgccgggccaagccattgaa
attataatctgcagggtaaaaccagctgatgccgagatgaactggcaccctaaggtcacc
agaaccatcagccagaagatccaaggtctgcagcatcaagcgagagccgtcttgagtctg
ggaaacacggtttttgttgaccctatggtacgagtcacccgggtgccgggcatgaaaact
tccatcaatgagtacaatgtacagtcagagattctgaacacagggatggcagtcagcaac
ccagaacatctggaccagctgagagcactgtgtgcagctgtggttcacgctacaaaagat
gcaagcgtggagaaggactcatcatctttggaagtcgggaccaaaacagaggacacggtc
agagctgctgaggatgctctgacgtccacacccaactctcctgtcagtctgaaatcttca
acaaatcattccaccgttgagatgcccccactctcagtctgtgatcaaaatttgaaggta
cacatacagaccagcagccagagagacctggacactgcagagctgacgcagaggaagctg
cagacaccttcagctctgcaggggagctttctgaactgctctttcttttgtgaccgttta
ngtggaagcgtgaagggtcaggtctacaaactggacctgcagcttcaccagaagatagct
gccgacctttgccacctggaaatgaagtcctgcgaaccggttctgaaactggtcaaacag
cggcagggatactgggaccagctcgtcaccaataagaatatttttgtgagttacaacatg
gagcacattgatgacgaagacaaagtactaaatggtgtgggctttgtggaggacacggga
gaagacaactggtatgtgaactcggagagcggcagcgagagcgactga
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