Nematolebias whitei (Rio pearlfish): 119416001
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Entry
119416001 CDS
T08042
Symbol
rag1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
119416001 (rag1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nwh04121
]
119416001 (rag1)
Enzymes [BR:
nwh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119416001 (rag1)
Ubiquitin system [BR:
nwh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
119416001 (rag1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RAG1_imp_bd
RAG1_ZnH2
RAG1_RNase_H
RAG1_C
RAG1
RAG1_pre-RNase_H
RAG1_ZnC2
RAG1_DNA-bd
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4_3
zf-RING_10
TRAF3_RING
zf-RING_2
U-box
zf-RAG1
Motif
Other DBs
NCBI-GeneID:
119416001
NCBI-ProteinID:
XP_037539099
LinkDB
All DBs
Position
10:16230616..16234735
Genome browser
AA seq
1065 aa
AA seq
DB search
MAAESPETDGPRSHMPAELHHPHSKYSQWKFKLFRVKSMEKAPLPSETQLEIGASLEISP
PAVPNIETDHDAGPSVMKLCLGGKSKENVEGPGRRVDMKLQEMDTHMNHLRCLCRICGVL
LRKVKGPVHDVHGALDEVSKCALRKMGCKFTTWSEVILKVFKVDVTEDTESVHPLSFCHR
CWMTAIRGGGVCSFTRPKITEWKPHSSHCNICSPRKPSFQRTGRKRRKIIPRVQSLAKRN
RWDHGESIAVGEKRALRPFGDRPGPVLRAWKKTGIQREQWVKNITHCQNAHLSIKLISEK
LPVDFIISFTCLVCDHLLSDPVQSPCGHLFCRSCIIKFIHVLGPHCPACNLSCAPDDLIS
PAKTFLSTLFALPLLCPCEGCGEHVQLDLFKAHCLSHELQKGTNQHSSELENYLLTNKGG
RPRQHLLSLTRRAQKHRLRDLKSQVKVFADKEEGGDLKSVCLTLFLLALRSGNEHRQADE
LEAMMQGRGFGLSPAVCLAIRVNTFLSCSQYHKMYRTVKATSGRQIFQPLHTLRAAEKEL
LPGFHQFEWQPALKNVSTSSSVGIINGLSGWTSSLDDSPADTITRRFRYDVALVAALKDL
EEDIMEGLRETGMEDSACTLGFSVMIKECCDGMGDVSEKHGGGPAVPEKAVRFSFTVMSV
SIQAEDDNEEITIFTEPKPNSELSCKPLCLMFVDESDHETLTGVLGPIVAERNAMKESRL
ILSLGGMPRSFRFHFRGTGYDEKMVREMEGLEASGSTYICTLCDSSRAEAAQNMVLHAIT
RSHEENLDRYEIWRTNPFSESVDELRDRVKGVSAKPFLETQPTMDALHCDIGNATEFYKI
FQDEIGEVYKKVNPSREERRSWRAALDKQLRKNLKLKPIMRMNGNYARRLMTMEAAEVVC
ELVPSEERREALRELMRLYLQMKPVWRATCPAKECPDQLCRYSFNSQRFADLLSSTFKYR
YNGKITNYLHKTLAHVPEIIERDGSIGAWASEGNESANKLFRRFRKMNARQSKAYELEDV
LKHHWLYTSKYLQKFMEAHKDSAKAFQATIDPEEIQDNDNLSLDF
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagaaagcccagagacagatggtcccagatcccacatgcctgctgagctccac
catccccactctaagtattctcagtggaagtttaagctgtttagggtgaagtccatggag
aaggcacctctacccagtgaaacacagcttgagataggagcctcattagaaatctcacct
cctgcagttccaaatatagagacagatcatgatgcgggtccaagtgttatgaaactgtgc
ctggggggaaaaagcaaagaaaatgtagagggccctggcagaagagtggatatgaagtta
caggaaatggacactcatatgaaccacctcaggtgcttgtgccgtatttgtggcgtgctg
ctgaggaaagtcaaaggacctgtgcatgatgttcatggagctctggatgaagtgagcaaa
tgtgcactgcgcaaaatgggctgtaagttcacaacctggtcggaagtcatcctgaaagtc
ttcaaagtggatgtgactgaggacacagagtcagttcaccctctttctttctgccatcgg
tgctggatgactgccattcgaggaggaggtgtctgcagcttcacaagaccaaaaatcact
gagtggaagccacactcttctcactgcaacatttgctctcccaggaaaccttcattccaa
aggacagggaggaagaggaggaaaattattcctagggtgcagagtctagccaaaaggaac
aggtgggaccatggtgaaagcattgctgtaggtgagaagagagccttgagaccctttgga
gaccgccctgggcctgtgttgagagcctggaagaaaactggcatccagagagagcagtgg
gtcaagaacatcacccactgccagaatgcccacctgagtatcaagctgatctctgagaag
ctccctgtggacttcatcatttcattcacctgcctggtgtgtgaccacctgctgtcagat
ccagttcagtctccctgtgggcaccttttctgccgcagctgcattataaaattcatccac
gttctgggaccccactgccctgcatgcaacctttcctgtgccccagatgatctcatctct
cctgccaaaacctttttatccacgctgtttgctctgccactgctgtgcccctgcgaaggc
tgtggtgagcatgtacaactagatttattcaaggcacactgtctgagccatgaactgcag
aaaggtacaaaccaacactcatctgaattagaaaactacttgctaaccaataaaggtgga
agaccccggcagcacttgctctctttaactcgtcgtgctcaaaagcatcggctaagagat
ctgaagagccaggtgaaggtgtttgcagacaaagaggaaggtggtgatctgaagtcggtg
tgtctgacactgtttctgcttgctctgagatctgggaatgaacatcggcaggcagatgag
cttgaggccatgatgcaaggaagaggctttggtttgagtcctgctgtgtgcttggccatt
cgggtcaacactttcctgagctgcagccagtaccataagatgtacaggacggtcaaagcc
accagtggtcgtcaaatctttcagcccttgcacaccctcagagctgcagaaaaagagctt
ctccctggctttcaccagtttgaatggcagccagctctaaaaaatgtgtctacatctagc
agtgttggcattattaatggcctctctggatggacatcctcgttggatgactctccagct
gacaccatcactcgacgctttcgctatgatgtggcactggtggcagcgttaaaggatctg
gaggaagacatcatggaggggctgagagagactgggatggaagacagcgcttgcacctta
ggttttagtgtcatgatcaaggaatgttgtgatggcatgggcgacgtcagtgaaaaacat
ggaggaggaccagctgttcctgaaaaggctgttcgcttctctttcactgttatgtctgtt
tctatccaggctgaagatgacaatgaagaaattaccattttcacagaaccaaaaccaaac
tcagagctatcctgtaagcccctttgtcttatgtttgtggatgagtcagaccacgagaca
cttacaggtgtcctggggcctattgttgcagagcgtaatgcaatgaaagaaagcaggctc
attctgtccttgggtggcatgccacgctcgtttcgcttccatttcagaggcacgggctat
gatgaaaagatggtgcgcgaaatggaggggctggaagcctcggggtctacatatatctgt
actctctgtgactccagtcgagcagaggccgctcaaaatatggtgttacacgccatcact
cgcagccatgaggaaaatctagaccgttatgaaatctggagaaccaatcctttctctgag
tctgtagatgagctgcgagaccgagtcaaaggagtctctgccaagccctttctggagacc
cagcccaccatggatgcattacactgtgacatcggcaacgccactgagttttacaaaatt
ttccaggatgagatcggggaagtctacaaaaaggtcaaccccagtcgggaggaacgacgc
agctggagggcagccttggataaacagctaagaaagaacctgaagcttaaaccaataatg
aggatgaatgggaactatgctcgcaggttaatgaccatggaggctgcagaggtggtgtgt
gagctggtgccctcagaggagagaagagaagccctgcgggagcttatgagactctacctc
caaatgaagccagtgtggcgtgccacctgcccagctaaggagtgccccgaccagctgtgc
cgctacagttttaactcgcagcgcttcgctgaccttctctcctctaccttcaaatatagg
tacaacgggaaaataactaattacctgcacaagaccctggctcatgtgcctgaaatcata
gagagagatggatccattggagcctgggctagcgagggaaacgagtcagcaaacaaattg
ttcaggcgtttcaggaagatgaatgcacgtcagtcaaaggcctacgagttggaggatgtg
ctgaaacaccactggctttacacctccaagtacctgcaaaagtttatggaagctcacaaa
gactctgccaaggcattccaggcaactattgacccagaagagatccaggacaatgacaat
ttgtctctggatttttga
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integrated database retrieval system
