Nematolebias whitei (Rio pearlfish): 119416093
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Entry
119416093 CDS
T08042
Name
(RefSeq) transcription factor SOX-6
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nwh03000
]
119416093
Transcription factors [BR:
nwh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
119416093
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
119416093
NCBI-ProteinID:
XP_037539199
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Position
10:6060871..6206570
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AA seq
773 aa
AA seq
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MMSSMRATPPFHVPSEEAEMIGQDNGPWDGAERDSPKETASPSSHDEPHPDKLQPAREKP
TDAEWEHVGPAVMDNESTKGCSVYTYRNNSTSPTKPEECSRDRGETIIGLTFGTPERRKG
SLADVVDTLKQKKLVELTKTEQDEPSCVERLLSKDWKEHVDRLNASELLGEVKGTPEALE
EKEHQLSTLISQLIGLREQLLSAQDEQKKMAASQLEKQRQQMELARQQQEQIARQQQQLL
QQQHKINILQQQIQVQGHMPPLMIPVFPHDQRSLAAAAAAQQGFLFPPSMSYKPGENYPM
QFIPSTMAAAAASGLNPLQLQQLYAAQLASMQISPGAKMATLPQAPNSSAPLSPSNLKSE
KRATSPVTQIKEEVSTQPLNLSARPKTAEPLRSPTSPTQSLFSGSKTSPPSMGKGRIPSP
SPNMGRNTSLDILANLNSTALFGDQDAVMKAIQEARSMREQFHREQLHHQQQPGHQSLEA
KLTALSSMSLNNSNKERLHYETLSQHLGKLGEDAGKMVHRVIDLTRPEDLDGSNVTEARV
FREARGRSNSEPHIKRPMNAFMVWAKDERRKILQTFPDMHNSNISKILGSRWKAMTNQEK
QPYYEEQARLSKIHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQLMRSRRQEMRQFFVG
PQPQISLGNSPGGGGVYPGAITMATVTPPPHLTSDCSSNSVSPEPNIPIIQSTYRVKSEP
GGGGASNGGRVGALDLPSDPNGDDDMDMYEDFDDEPKSDYSSDHETQEAVSAN
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcttccatgagagcaactcctccctttcatgtaccgtctgaggaggcggaaatg
atcggtcaggacaacgggccctgggacggcgcagagcgagacagcccaaaggagacggca
tcgccttcttcgcatgatgagccccacccggacaaacttcagcctgccagagagaaacca
acagacgctgagtgggagcacgtcggccctgctgtgatggacaatgaaagcaccaagggc
tgctcagtttacacctaccggaataactctacctctccaaccaaaccagaggagtgttct
agagatcgaggagagacgatcatcggcctcacgtttgggacaccggagcgtcgcaaagga
agcctggcagatgtggtggacactctgaaacagaagaagctcgttgagctgaccaaaaca
gaacaagacgaaccctcttgtgtggagaggttactttccaaggactggaaggagcatgtt
gaccgtcttaatgccagtgaactactgggagaggttaaaggtactccagaggctcttgag
gaaaaagagcaccagctgtcgaccctgatcagtcagctgatcggtctgagggagcagctt
ctctctgcccaggatgagcagaaaaagatggccgcctcacagctggaaaagcagaggcag
cagatggagctggccagacagcagcaggagcagattgctcgacaacagcagcagctcctg
cagcaacagcacaagatcaacattctccagcaacagatccaggtccagggtcacatgcca
cctctgatgatcccggtgtttccacacgaccagcggtctctagccgccgccgctgccgca
cagcaaggcttcctcttcccacccagcatgtcatacaagccaggtgagaattacccaatg
cagttcattccctcaacaatggcagctgccgcggcgtctggcctcaaccctctacagcta
cagcagctgtatgctgcacagctggcaagcatgcagatctccccaggagccaagatggca
accctaccacaggctcctaactcctccgctcctctctccccgtccaacctaaagagcgag
aaacgagcaaccagcccagtcactcagattaaggaagaagtatccacacagccattgaac
ctctcagccagacctaagacagctgagcctcttcgctccccgacgtctccgacgcagagt
ctgttctctggaagcaagaccagccctcccagcatgggcaaggggcgtatccccagcccc
agccccaacatgggaagaaacacatctctagacatcttggccaaccttaactccacggca
ttgtttggggaccaagacgcggtgatgaaagccatccaagaggccagaagcatgagggag
cagttccaccgggagcagctccaccatcagcagcagccgggacaccagagtctggaggcc
aaactgacggcactcagcagcatgagcctcaacaacagcaacaaggagaggctgcactat
gagacactgagtcagcacctcgggaagctcggggaggatgccgggaagatggtccatcga
gtcattgacctgacaagaccagaggatctagatgggagtaacgttacagaggcgcgagtg
tttagggaggccagaggaaggagcaacagtgagccccacatcaagagacccatgaacgcc
ttcatggtttgggctaaagacgagagaaggaagattctgcagaccttccccgacatgcac
aactccaacatcagcaagatcctgggttctcgctggaaagccatgaccaatcaggagaaa
cagccgtactacgaggagcaggcccgcctaagcaagatccacttggagaaatatcccaac
tacaagtacaagccacggcccaagagaacctgcatcatcgacggcaagaagctgcgcatc
ggggagtacaagcagctgatgcgctcacgacgccaggagatgaggcagttttttgtgggc
cctcagccacagatttctttgggcaacagcccaggaggaggcggagtttacccaggtgca
ataaccatggcaacagtcacaccacccccacacctgacctcagactgctcaagcaactca
gtcagccccgaacccaacatccccatcattcagagcacgtacagggtgaagtctgagccc
ggtgggggcggagccagcaatggaggcagagtcggagctttggacctgcccagcgacccc
aacggagacgacgacatggacatgtacgaggactttgacgatgagcccaaatcagactat
agcagcgatcacgagacacaggaggccgtcagtgccaactga
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