Nematolebias whitei (Rio pearlfish): 119416102
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Entry
119416102 CDS
T08042
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119416102 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nwh03021
]
119416102 (sf3b3)
03041 Spliceosome [BR:
nwh03041
]
119416102 (sf3b3)
03036 Chromosome and associated proteins [BR:
nwh03036
]
119416102 (sf3b3)
Transcription machinery [BR:
nwh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
119416102 (sf3b3)
Spliceosome [BR:
nwh03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
119416102 (sf3b3)
Complex B
119416102 (sf3b3)
Complex C
U2 SnRNP specific factors
119416102 (sf3b3)
Chromosome and associated proteins [BR:
nwh03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
119416102 (sf3b3)
TFTC complex
119416102 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
119416102
NCBI-ProteinID:
XP_037539216
LinkDB
All DBs
Position
10:complement(8573116..8593942)
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNITLQRATGISHAIHGNFSGTKMQEIAVSRGKILELLRPDANTGKVHTLLTMEVFG
IIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYHPSKNQFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRLKYFDTIPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMSCQIADLANEDT
PQLYVACGRGSRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPLDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGDKGTI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRRFVIHPETNNLVLIETDHNSYTETTKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGSPKAGAGQWASLVRLVNPIQGSTLDQVQLEQNEAAFSVTVCRFANTG
DDWYVLVGVARDMILNPRSVGGGFIYTYRLNAEGEKLEFVHKTPVEDVPLAIAPFQGRIL
VGVGKLLRIYDLGKKKLLRKCENKHIPNLVTGIYTIGQRVIISDVQESLFWVRYRRNENQ
LIIFADDTYPRWVTTACLLDYDTMASADKFGNISIVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctctacaacatcaccctacagcgggccactggcatcagccatgccatccatgga
aacttctcaggaaccaagatgcaggagattgctgtttccaggggaaagatcctagagttg
ctgcgtccagatgccaacacgggcaaggtgcacactcttctcacgatggaagtgttcggc
atcatcaggtccctgatggcgttcagactcacgggaggaaccaaagattacatcgttgtg
ggaagtgacagtggtcggatcgtcattttggagtatcatccgtctaaaaaccagtttgag
aagatccaccaggaaacgtttgggaagagcggctgccggcgcatcgttcccgggcagttc
ctggctgtcgaccctaaaggccgagccgttatgatcggagcgatagagaagcagaagctg
gtttatattctgaacagagatgctgctgccaggctgaccatctcctctcctctggaagct
cacaaagcaaacacgctcgtctatcacgtggtgggagtcgatgtcggctttgaaaatcca
atgtttgcctgcttggaaatggattacgaggaagcggacaacgacccaacaggagaagct
gctgcaaacacacaacaaactctcaccttttacgagctggatctgggcctgaaccacgtg
gtccgaaagtacagcgaagctttggaggaacatggaaatttcctcatcactgttcctggt
ggttctgatgggcccagtggagttctgatctgctctgaaaactacatcacctacaagaac
tttggagaccagcctgacattcgctgtcctatcccccgccgcaggaatgacctggatgac
ccagagcggggcatgatcttcgtctgctctgccacccacaaaaccaagtccatgttcttc
ttcctggctcagacggagcagggggacatctttaaggtcactctggagactgatgaagaa
atggtgacagaaatccggctgaaatacttcgacaccatccctgtggcagcagccatgtgt
gtcctgaagaccggcttcctgtttgtggcctcagagtttggaaatcattacctttaccaa
attgctcatttgggtgatgatgacgaggagccggagttctcctctgccatgccgctggag
gagggcgacaccttcttctttcagcctcggcccttgaagaacttggttctggtggacgaa
caagagaacttgtcaccaatcatgtcctgccagatcgctgacttggccaacgaagacaca
cctcagctgtacgtagcctgtggacgaggatcgaggtccactctgagggtccttcgacac
ggactggaggtgtcggagatggccgtctccgagctgcccggtaaccccaacgctgtctgg
accgtacggagacacatcgaagatgagtttgacgcctacatcatcgtgtctttcgtcaac
gccaccctggttctgtccatcggagagaccgtagaggaagtgacagactccggattcctg
ggaaccacgcccaccctctcctgctctctgctgggtgaagacgctctcgttcaggtttat
ccagacggtatccggcacatccgagcagacaagcgtgtgaacgagtggaaaactcccgga
aagaaaacgatcgtccgctgcgccgtgaaccagcggcaggtggtcatcgccctgacagga
ggagagctggtctactttgagatggacccgtcgggacagctgaacgagtacacggagaga
aaggagatgtctgcagacgtggtctgtatgagtctggccaacgtcccgcctggcgagcag
cgctctcgcttcctggctgtcggtctggtggacaacacagtccggatcatctccctggac
cctctggactgcctgcagcctctgagcatgcaggctctccctgcgcagcctgagagtctg
tgcatcgtagagatgggaggggtggagaaacaggatgaactcggagacaaaggcaccatc
ggcttcctctacctcaacatcggcctgcagaacggtgtgctgctgaggactgtcctggac
cctgtgaccggtgacctgtctgacaccagaacccgctacctgggctccagaccggtcaaa
ctcttcagagttcggatgcagggacaggaagccgtgctggccatgtccagccgatcgtgg
ctcagctactcgtatcagtcccgcttccatctgaccccgctctcctacgagactctggag
tacgcctcaggattcgcctcggagcagtgccccgaaggcatcgtggccatctccaccaac
actctgaggattttggctttggagaagctgggagccgtcttcaaccaggtggccttccct
ctgcagtacactcccaggaggtttgtgatccacccagagaccaacaacctcgtcttgatc
gagaccgaccacaactcctacaccgagaccaccaaggctcagaggaagcagcagatggcc
gaggagatggtggaggctgctggcgaggacgagcgggagctggctgcagagatggccgcg
gcgttcctcaatgagaatctccccgaggccatttttggttcgcccaaagccggagcgggt
cagtgggcctcgctggtgcgactggtcaaccccatccagggctcgactctggaccaggtg
cagctggagcagaacgaagctgcgttcagcgttaccgtgtgtcgtttcgccaacacggga
gatgattggtacgtcctggttggagttgcccgagacatgattctgaacccgaggtcggtg
ggcgggggcttcatctacacgtatcgtctcaacgctgaaggagagaagctggagtttgtt
cataagacccccgtggaggacgtcccactggccatcgccccgttccagggacgcatcctg
gtcggagtcgggaagctgctgaggatctacgacctcggcaaaaagaagctgctgcgtaaa
tgtgaaaacaagcacattcccaacctggtgacggggatctacaccatcggtcagcgggtc
atcatctccgacgtccaggagagtctcttctgggttcggtaccgccggaacgagaaccag
ctcatcatcttcgcggacgatacgtacccccgctgggtgacgacggcctgcctgctcgac
tacgacaccatggcttctgctgacaagttcggcaacatcagcatcgtgcgtcttcctccc
aacaccagtgatgatgtggatgaagaccccacagggaacaaagccttgtgggacagaggt
cttctcaacggagcctcacagaaggctgaagttatcatgaactaccatgtaggggagacg
gtcttgtctctccagaagaccactctgatccccgggggctccgagtctctggtctacacc
accctgtccgggggaattgggatcctggtccccttcacgtcccacgaggatcatgacttc
ttccaacatctggagatgcacatgcgctcagagttccctccgctgtgtggccgagatcat
ctcagcttcaggtcctactacttcccagtgaagaacgtgatcgacggagacctctgtgag
cagttcaacagcatggatccacacaaacagaaaagtgtggcggaggaactggaccggacc
ccaccagaagtctccaagaagctggaggacattcgcactcgctacgccttctag
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integrated database retrieval system
