Nematolebias whitei (Rio pearlfish): 119416887
Help
Entry
119416887 CDS
T08042
Symbol
prpf6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119416887 (prpf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nwh03041
]
119416887 (prpf6)
Spliceosome [BR:
nwh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
119416887 (prpf6)
Complex C
U5 SnRNP specific factors
119416887 (prpf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
Suf
HAT_PRP39_C
TPR_16
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
TPR_2
TPR_17
FAT
ARM_TT21_2nd
ARM_TT21_C
T7SS_EccA1_N
ARM_TT21_5th
TPR_21
Mt_ATP-synt_B
Motif
Other DBs
NCBI-GeneID:
119416887
NCBI-ProteinID:
XP_037540008
LinkDB
All DBs
Position
11:26784986..26797257
Genome browser
AA seq
969 aa
AA seq
DB search
MATAAAKQGSKIVSKAGAGGTGTAGAGGGPPVIPLASPLMGKKKKPFLGMPAPLGYVPGL
GRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKSQEEDDEDLNDTNYDEFNG
YAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERRELREKEEIEKYRMERPKIQQQFS
DLKRKLAEVSEEEWLSIPEVGDARNKRQRNPRYEKLTPVPDSFFSKHLQTGENHTSVDPL
QGLGGLNTPYPGSMTPGLMTPGTGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKG
YLTDLNSMIPTYGGDISDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLI
MKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRV
LKKALENVSKSVRLWKTAVELEDPEDARIMLSRAVECCPTSVELWLALARLETYENARRV
LNKARENIPTDRHIWITAAKLEEANGNTQMVDKIIDRAITSLRANGVEINREQWIQDAEE
CDKAGSVATCQAVIRAVIGIGIDEEDRKHTWMEDADSCVAHGALECSRAIYAHALQVFPS
KKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILA
LAFQANPNSEEIWLAAIKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNIE
AAQDLCTEALKHYEDFPKLWMMRGQIEEQCENMDRAREGYNQGLKKCPHSVPLWLLLSHL
EERVGQLTRARAILEKARLKNPQCPELWLESVRLEFRAGLKNISNTLMAKALQECPNSGI
LWAEAVLLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFLRTVKIEP
DLGDAWALFYKFELQHGTEEQQEEVRKRCENAEPRHGELWCAESKHVLNWQKKTGEILVQ
VASKIKNTF
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atggctaccgctgcagcaaaacaagggtctaaaattgtgtccaaagcaggtgcgggaggc
accggtacggcgggggccggtggcgggcccccggtaattcctcttgcctctccgctaatg
gggaaaaagaagaagccgtttctggggatgcccgctccgctgggttacgttcctggtctg
ggcagaggagccactggtttcaccacacggtctgatatcggtcctgctcgtgatgccaat
gatcctgtggatgatcgacatgcacccccgggaaaacggaccgttggggaccaaatgaaa
aagagccaggaggaagatgacgaagatctgaacgacaccaactatgacgagtttaatggt
tatgcaggtagcttgttctccagcgggccttatgaaaaagatgatgaagaagcagatgcg
atatatgcagctctggataaaaggatggatgaaagacgcaaagaaagaagggagctgaga
gaaaaggaagaaattgaaaagtatcgtatggagcgacccaaaatccagcagcaattctca
gacctaaagaggaaattggcagaagtgtctgaggaggagtggctgagcatccccgaagtt
ggagatgccaggaacaagcggcaaaggaatccccgttatgagaagctcactcctgtccct
gacagcttcttctctaagcacctgcagactggggaaaaccacacctctgttgatccttta
caagggttgggtggcctgaacacaccatacccaggcagtatgacccctggtctgatgact
cctgggacaggagaattggacatgaggaagattggtcaagccagaaacaccctgatggat
atgaggctcagtcaggtttctgactcagtcagtggacagacagtagtggatcccaagggt
tacctgacagatctcaactccatgatccccacttatggaggagacattagtgacatcaag
aaagctcgtctgctgctgaaatcagtgagagagactaatcctcatcacccacctgcctgg
attgcttctgccaggctggaagaagtaacaggcaaactgcaggtggccaggaacctgatc
atgaaaggcacagagatgtgtcctaagagtgaggatgtttggctggaggcagctaggctc
cagcctggtgacacagctaaagctgtggtggctcaggctgttcgtcacctcccacagtct
gtccgcatctacatcagggctgcagagctggagacagacatcagagctaagaaacgagtc
ctcaaaaaggccttggagaatgtatcaaagtctgttcgactgtggaaaactgctgttgag
ctggaggacccggaggatgccaggatcatgctcagcagagctgtggagtgctgtcctacc
agtgtggagctatggttggcgttagcccgtcttgaaacatacgagaatgcccgccgtgtc
ttgaataaagctcgagagaacatccccactgaccgccacatctggatcacagctgctaag
ttggaggaggccaacggcaacactcagatggtagacaagatcattgacagagccatcact
tctctgcgagccaacggtgtggagatcaaccgagagcagtggatacaggacgcagaagag
tgtgacaaagcaggcagtgtggctacttgccaagcggtcataagggctgtcataggaatt
gggattgatgaggaggaccgtaaacacacctggatggaggatgcagatagctgtgtggct
catggagcgctggagtgttccagggccatctatgctcatgccctgcaggtgtttcccagt
aagaaaagtgtctggcttagagcagcctactttgagaagaaccatggcaccagagagtct
ttggaggctctgctgcagagagctgtggctcactgtcccaaagcagaggtcctgtggttg
atgggggccaagtccaagtggctggctggagatgtgccagcagctaggagtatccttgct
cttgcctttcaggctaaccccaacagtgaagaaatctggctggctgctatcaaactggag
tctgaaaataatgagtatgaaagagctcgtcgactgctggccaaggctcgcagcagtgca
cccacagcccgggtattcatgaagtcggtgaagttggagtgggtgttggggaacatcgaa
gctgcccaggacttgtgcaccgaggctctgaaacactacgaggacttccccaagctttgg
atgatgcgagggcaaatcgaggagcagtgtgaaaacatggaccgagccagagagggttat
aaccaagggttgaaaaagtgcccccactcagtgcccctgtggctgctgctgtctcatctt
gaagaaagggttggacagctgaccagggccagagccattctggagaaggctcggctcaag
aacccgcagtgccccgagctgtggttggagtctgtcagactggagtttcgggccggactg
aaaaacatttccaacacactgatggccaaagctctgcaggagtgcccaaattcaggcatc
ctgtgggctgaggccgtgctcttggaggccagacctcagaggaagaccaagagcgttgac
gctttgaagaaatgtgaacacgatcctcacgttctgctcgctgtagcgaagttgttctgg
agtgaacgtaagatcaccaaagcccgggagtggttcctcaggactgtcaagattgagcca
gacctgggagatgcttgggctctcttctacaagtttgagctgcagcatggcacagaggaa
cagcaggaagaggtgcggaagcgatgtgagaatgcagagccccgtcacggagagctgtgg
tgtgccgagtccaaacatgtcctgaactggcagaagaaaacaggagagatattagtgcag
gtagccagcaagatcaagaacactttctaa
DBGET
integrated database retrieval system