KEGG   Nematolebias whitei (Rio pearlfish): 119416887
Entry
119416887         CDS       T08042                                 
Symbol
prpf6
Name
(RefSeq) pre-mRNA-processing factor 6
  KO
K12855  pre-mRNA-processing factor 6
Organism
nwh  Nematolebias whitei (Rio pearlfish)
Pathway
nwh03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nwh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    119416887 (prpf6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:nwh03041]
    119416887 (prpf6)
Spliceosome [BR:nwh03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    119416887 (prpf6)
 Complex C
   U5 SnRNP specific factors
    119416887 (prpf6)
SSDB
Motif
Pfam: PRP1_N TPR_14 TPR_19 HAT_PRP39_N Suf HAT_PRP39_C TPR_16 HAT_Syf1_CNRKL1_C HAT_Syf1_CNRKL1_N TPR_2 TPR_17 FAT ARM_TT21_2nd ARM_TT21_C T7SS_EccA1_N ARM_TT21_5th TPR_21 Mt_ATP-synt_B
Other DBs
NCBI-GeneID: 119416887
NCBI-ProteinID: XP_037540008
LinkDB
Position
11:26784986..26797257
AA seq 969 aa
MATAAAKQGSKIVSKAGAGGTGTAGAGGGPPVIPLASPLMGKKKKPFLGMPAPLGYVPGL
GRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKSQEEDDEDLNDTNYDEFNG
YAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERRELREKEEIEKYRMERPKIQQQFS
DLKRKLAEVSEEEWLSIPEVGDARNKRQRNPRYEKLTPVPDSFFSKHLQTGENHTSVDPL
QGLGGLNTPYPGSMTPGLMTPGTGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKG
YLTDLNSMIPTYGGDISDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLI
MKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRV
LKKALENVSKSVRLWKTAVELEDPEDARIMLSRAVECCPTSVELWLALARLETYENARRV
LNKARENIPTDRHIWITAAKLEEANGNTQMVDKIIDRAITSLRANGVEINREQWIQDAEE
CDKAGSVATCQAVIRAVIGIGIDEEDRKHTWMEDADSCVAHGALECSRAIYAHALQVFPS
KKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILA
LAFQANPNSEEIWLAAIKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNIE
AAQDLCTEALKHYEDFPKLWMMRGQIEEQCENMDRAREGYNQGLKKCPHSVPLWLLLSHL
EERVGQLTRARAILEKARLKNPQCPELWLESVRLEFRAGLKNISNTLMAKALQECPNSGI
LWAEAVLLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFLRTVKIEP
DLGDAWALFYKFELQHGTEEQQEEVRKRCENAEPRHGELWCAESKHVLNWQKKTGEILVQ
VASKIKNTF
NT seq 2910 nt   +upstreamnt  +downstreamnt
atggctaccgctgcagcaaaacaagggtctaaaattgtgtccaaagcaggtgcgggaggc
accggtacggcgggggccggtggcgggcccccggtaattcctcttgcctctccgctaatg
gggaaaaagaagaagccgtttctggggatgcccgctccgctgggttacgttcctggtctg
ggcagaggagccactggtttcaccacacggtctgatatcggtcctgctcgtgatgccaat
gatcctgtggatgatcgacatgcacccccgggaaaacggaccgttggggaccaaatgaaa
aagagccaggaggaagatgacgaagatctgaacgacaccaactatgacgagtttaatggt
tatgcaggtagcttgttctccagcgggccttatgaaaaagatgatgaagaagcagatgcg
atatatgcagctctggataaaaggatggatgaaagacgcaaagaaagaagggagctgaga
gaaaaggaagaaattgaaaagtatcgtatggagcgacccaaaatccagcagcaattctca
gacctaaagaggaaattggcagaagtgtctgaggaggagtggctgagcatccccgaagtt
ggagatgccaggaacaagcggcaaaggaatccccgttatgagaagctcactcctgtccct
gacagcttcttctctaagcacctgcagactggggaaaaccacacctctgttgatccttta
caagggttgggtggcctgaacacaccatacccaggcagtatgacccctggtctgatgact
cctgggacaggagaattggacatgaggaagattggtcaagccagaaacaccctgatggat
atgaggctcagtcaggtttctgactcagtcagtggacagacagtagtggatcccaagggt
tacctgacagatctcaactccatgatccccacttatggaggagacattagtgacatcaag
aaagctcgtctgctgctgaaatcagtgagagagactaatcctcatcacccacctgcctgg
attgcttctgccaggctggaagaagtaacaggcaaactgcaggtggccaggaacctgatc
atgaaaggcacagagatgtgtcctaagagtgaggatgtttggctggaggcagctaggctc
cagcctggtgacacagctaaagctgtggtggctcaggctgttcgtcacctcccacagtct
gtccgcatctacatcagggctgcagagctggagacagacatcagagctaagaaacgagtc
ctcaaaaaggccttggagaatgtatcaaagtctgttcgactgtggaaaactgctgttgag
ctggaggacccggaggatgccaggatcatgctcagcagagctgtggagtgctgtcctacc
agtgtggagctatggttggcgttagcccgtcttgaaacatacgagaatgcccgccgtgtc
ttgaataaagctcgagagaacatccccactgaccgccacatctggatcacagctgctaag
ttggaggaggccaacggcaacactcagatggtagacaagatcattgacagagccatcact
tctctgcgagccaacggtgtggagatcaaccgagagcagtggatacaggacgcagaagag
tgtgacaaagcaggcagtgtggctacttgccaagcggtcataagggctgtcataggaatt
gggattgatgaggaggaccgtaaacacacctggatggaggatgcagatagctgtgtggct
catggagcgctggagtgttccagggccatctatgctcatgccctgcaggtgtttcccagt
aagaaaagtgtctggcttagagcagcctactttgagaagaaccatggcaccagagagtct
ttggaggctctgctgcagagagctgtggctcactgtcccaaagcagaggtcctgtggttg
atgggggccaagtccaagtggctggctggagatgtgccagcagctaggagtatccttgct
cttgcctttcaggctaaccccaacagtgaagaaatctggctggctgctatcaaactggag
tctgaaaataatgagtatgaaagagctcgtcgactgctggccaaggctcgcagcagtgca
cccacagcccgggtattcatgaagtcggtgaagttggagtgggtgttggggaacatcgaa
gctgcccaggacttgtgcaccgaggctctgaaacactacgaggacttccccaagctttgg
atgatgcgagggcaaatcgaggagcagtgtgaaaacatggaccgagccagagagggttat
aaccaagggttgaaaaagtgcccccactcagtgcccctgtggctgctgctgtctcatctt
gaagaaagggttggacagctgaccagggccagagccattctggagaaggctcggctcaag
aacccgcagtgccccgagctgtggttggagtctgtcagactggagtttcgggccggactg
aaaaacatttccaacacactgatggccaaagctctgcaggagtgcccaaattcaggcatc
ctgtgggctgaggccgtgctcttggaggccagacctcagaggaagaccaagagcgttgac
gctttgaagaaatgtgaacacgatcctcacgttctgctcgctgtagcgaagttgttctgg
agtgaacgtaagatcaccaaagcccgggagtggttcctcaggactgtcaagattgagcca
gacctgggagatgcttgggctctcttctacaagtttgagctgcagcatggcacagaggaa
cagcaggaagaggtgcggaagcgatgtgagaatgcagagccccgtcacggagagctgtgg
tgtgccgagtccaaacatgtcctgaactggcagaagaaaacaggagagatattagtgcag
gtagccagcaagatcaagaacactttctaa

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