Nematolebias whitei (Rio pearlfish): 119416907
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Entry
119416907 CDS
T08042
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nwh03041
]
119416907 (ddx20)
Enzymes [BR:
nwh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119416907 (ddx20)
Spliceosome [BR:
nwh03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
119416907 (ddx20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
Motif
Other DBs
NCBI-GeneID:
119416907
NCBI-ProteinID:
XP_037540029
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Position
11:27954796..27964486
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AA seq
773 aa
AA seq
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MAASIRKAAHDIETRKRTDDVLLSEKIEFSSLLLSRAVLDGLSAAGFHKPSPIQLKAIPL
GRCGLDLIVQAKSGTGKTCVFCTIALDSLVLENPATQVLILAPTREIAVQIHSVMMAIGC
AIEGLECHVFIGGRPVSQDKQRLKKCHIAVGSPGRIKQLIELDILSPVSIRLFVLDEADK
LLEEGSFQEQINWIFSSLPVNKQMLALSATYPESLAQYLTRYMNEPTFVRLNPSDMGLKG
LKQFYKLVPSHPLPHKVFEEKVQHLLELFSKIPFNQALVFSNLHTRAQHLADILSSKGLP
AVCISGGLSQDQRLEAMSKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMH
RIGRAGRFGTQGMAVTYCCHGEEENKIMAIAQKCGLSLSALPSTLEPGLMDEPCDWDVCA
EASTVSQQLLRTEKRKRSKPQVSVSEPVKDQAVEQRSQTKEARAQAGPRMSLHGEEIARQ
TSCAGDASQQSSSRVTPTRKELQDALPKIPPLSSFKSCRSRFMTFEEAQRDFQTFITTGL
GRSVEVVREFRGEDQNGYKEYITLHDDGAQDLLLNGVQLQSDVSPPSSISGSSNSPSDMD
MDMDMTPRGSNQLPDAEHRSPVQPQPDSTSTAQNPSIPEIHKQTSRATSGGVLSPPESRK
LRAKTSTESSQTAPRQTCRETSKKVKKESSKLSEKMKEEPERDEEEERMDVEEEEEEWSS
EAYWRACYRAWSDYYSSMCLLPEQRYQSYYSAAHNWMAAYRMNAVYMQELMKH
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctccataagaaaagcagcccacgacatcgagacacgaaaaaggaccgacgat
gttcttctgtcggaaaagattgagttcagctcgctgctgctgtctcgggccgtgctggac
ggactgtccgccgcgggtttccacaaaccctccccgatccagctcaaagcgatcccgctg
ggccgctgcggactcgatttgattgtgcaagccaagtctggtacaggaaagacgtgcgtg
ttctgcaccatcgctctcgactctcttgtcctggagaatccagctactcaggttcttatt
ctggctccaacacgtgagatagcagtgcagatccactctgtgatgatggccatcggctgt
gccatagaaggtctggagtgtcatgttttcatcggggggagacccgtgagtcaggacaaa
cagcgtctgaagaagtgtcacattgctgtgggctcacctggtcgcatcaagcagctcatc
gagctggacattttgtcccccgtcagcatcagactgtttgttctggacgaggccgacaag
ctgctggaggagggcagcttccaggagcagataaactggatcttctcctctctgcctgtc
aacaaacagatgcttgctctttctgccacctacccagaatcccttgctcagtacctcacc
cgctacatgaatgagcccactttcgttagactcaacccaagtgacatgggtctgaaaggt
ctgaagcagttctacaagctggtgccatcccaccccctacctcacaaggtttttgaggag
aaggtgcagcatttgctcgagctgttcagtaaaatccccttcaaccaagccctggtgttt
tccaacctacacacaagggctcaacacttggcagacatcctgtcctccaaaggcttacct
gctgtttgtatatcaggtggcctgagtcaggaccagagactggaagcaatgtccaaactg
aagcagtaccagtgcagggtgctcatctccaccgacctgacttccaggggtatagatgcc
gagaaagtcaacctggtgatcaacctggacgtgcctcaggactgggagacctacatgcac
aggattggacgggctggacgttttggcactcaggggatggctgtgacctactgttgccat
ggtgaggaggagaacaagatcatggccatcgctcagaagtgtggcctcagtttgtctgct
cttccttccactttagagcctgggttgatggatgagccgtgcgactgggacgtgtgcgct
gaggcctccactgtgtcgcagcagttgctccgaactgaaaagaggaagcgttcaaagccc
caagtctccgtgtcggaacccgtcaaggatcaagctgtggagcaaaggagtcaaacgaag
gaagctagagcccaggcaggacccaggatgtcgttacacggtgaagaaatcgcaagacag
acgagctgcgcaggagacgcctcgcagcagagctcttctcgtgtgacgccgactcgtaag
gagctgcaggacgccctgccaaagatccctcctctcagctcgttcaagagctgccggtcg
aggtttatgacctttgaggaggcccagcgtgacttccagacgtttatcaccacaggtttg
gggagatcagtggaggtcgtcagagagttcagaggcgaagaccagaacgggtataaggag
tacatcacactgcacgacgatggagctcaagatttattactaaatggtgtccagctgcag
tcggacgtttcacctccaagctcgatatcgggttcttctaactcgccgtccgacatggac
atggacatggacatgacccccagaggctccaatcagcttccagacgctgagcacagatct
cctgttcaacctcagcctgactctacatccactgcacaaaatccctctatacctgaaata
cataagcagacatccagagcaacaagtgggggagttttgtctccccccgagagcaggaag
ctacgtgctaagacaagcaccgagagcagtcagaccgctccaagacagacttgcagggaa
acatcaaaaaaggtgaaaaaagagagctcgaagctctcggagaagatgaaagaagagcca
gagagggatgaagaagaagagcgcatggacgtggaggaggaggaggaggagtggagctcg
gaggcatattggagagcctgctacagagcctggagcgattactactcctccatgtgtctc
cttccagagcagaggtaccaaagctactacagcgcagctcataactggatggcagcttat
cgaatgaacgcagtctacatgcaggagctcatgaaacactga
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