Nematolebias whitei (Rio pearlfish): 119417480
Help
Entry
119417480 CDS
T08042
Symbol
pan2
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119417480 (pan2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwh03019
]
119417480 (pan2)
Enzymes [BR:
nwh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
119417480 (pan2)
Messenger RNA biogenesis [BR:
nwh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119417480 (pan2)
mRNA degradation factors
3'-5' decay
Pan complex
119417480 (pan2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_CDC20-Fz
Beta-prop_THOC3
WD40_like
Motif
Other DBs
NCBI-GeneID:
119417480
NCBI-ProteinID:
XP_037540618
LinkDB
All DBs
Position
11:15218046..15233894
Genome browser
AA seq
1207 aa
AA seq
DB search
MNFDGLDAGMGEYSASLHGTMDAGLEPSLDPHLNPNLLQAVELDPEGLAGTVPEPVHLME
GMFSELHSVVSEVGIPVTAVHFDLQEEMLWMGNHRGHATSYFGPTMGRYSSFQVHSTDDI
RHIQSLETGVLFLSKGNLKCYTRGGLVMFDYPMEEGADMHSLFMADNNMLLMGGLQNYVV
EVDLNTVQETQKFTVEVPGVAIMRQTNRFFFCGHTSGKITLRDLRTFKMEHEFDAFSGSL
SDFDVHGNLLAACGFSSRGLNGMACDRFLMVYDLRMMRAVTPLQVHVDPLFLRFIPTYTS
RLVIISQTGQCQFCEPTGLANVADIFHVNTVGQLLMSFDVSASKQALAFGDSGGCVHLWA
DVPEVSFNDYSRETEFALPCLVDTLPQLDWNHDFLPLSLVPMPLTSAEPLLSDWPTALVT
PSPRRAPPVDPEILRTMKTVGFIGYAPNPRTRPRNQVPYKIKDVELDYDNYSQVPESPIG
REIEPHLCMVAKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYF
LEPIRCLVQNHLCQKEFCLACELGFLFRMLDLSRGDPCQASNFLRAFRTIPEASALGLIL
ADSDEQTGKAKLGRLIQSWNRFILTQLHQETQEQEGPQAYRGASSSSLGSSSESAVGKLF
GCEVENSSLCRCGKETVRSSLTLLFTMHYPEQSSQEKSMKAFDFAEILKKSICLEQSTQA
WCENCEKYQPTVQTRNIRCLPDVLVINCEVNSAKEAEFWKVQAEYAFNKAMQKEATEPAK
PTEPPPISTEWCLNGEEICSVDSFAFDTRAEDLRHVWIPVTLKMSISKTQGLEVSSCSEG
EELSAAEEAEGVSLYDLVVTVPHIQDARTGGNLVAHIKVSETYHQRKEGVTHQQWYLFND
FLIEPIDKTEAAQFDVSWKVPAILYYAKRNYHTKYDLRIKNPIDASVLLTEASLARKQRK
SHATFIPLMVSEMPQAGDLVGLDAEFVTLNQEEAELRSDGTKSTIKPSQMSVARITCVRG
QGPNEGVPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDT
GVRFVGHGLQKDFRVINLLVPKDQVVDTVHLFHLPRKRMISLRFLAWYFLDLNIQGETHD
SIEDARTALQLYRKFLELSRGGVSDDVRKVLKGLYEKGRQLDWKVPDSDTGDSQASTKTI
QSDGGWC
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgacggtctcgacgctgggatgggtgagtactcggccagtcttcacgggact
atggatgcaggactggaaccctccttggacccgcacctgaacccgaacttactgcaggct
gtggagcttgacccggaggggctggcggggacggtaccggagcccgtgcacctgatggag
ggcatgttttcagagctccacagcgtggtgtcagaagttggcatcccagtcactgcagtc
cattttgacctccaggaggagatgctctggatggggaaccacagaggtcatgcaacctca
tacttcggacctacaatgggtcgctattcttctttccaagtgcattcaacagatgacatc
cgacacattcaaagtctagaaacaggggtgttgtttctttccaaaggcaacctgaagtgc
tacactcgcgggggcctcgttatgtttgattatccgatggaggaaggagctgatatgcac
agtcttttcatggctgacaacaacatgttgctcatgggtggattacaaaactatgtggtg
gaagtggacttgaatacggttcaagaaactcaaaagttcacagttgaggtacctggagtg
gcaataatgcgccaaaccaatcgtttcttcttctgtgggcacacttctggcaagataacc
ctccgtgacctgcgcactttcaagatggagcatgagtttgatgcgttctctggcagcctc
tcggacttcgacgttcacgggaaccttcttgctgcgtgcgggttttcaagccgtggactg
aacgggatggcgtgcgatcgtttcctgatggtgtacgacctccgcatgatgcgagctgta
accccacttcaagtgcacgtggatcccctcttcctgcgctttattcctacctacacatca
cgccttgtgatcatctcacagacaggtcagtgtcagttctgtgagcccactggtctggcc
aacgtggcagatattttccacgtcaacaccgtgggccagctgctcatgagtttcgacgtg
tcggccagcaagcaagccttggcctttggggattcggggggctgtgtgcacctgtgggca
gatgttcccgaggtctctttcaatgactactctcgagagacggagttcgctctgccctgc
ctcgttgacacgctgcctcagctggactggaaccacgactttctgccgctttctctcgtc
cccatgccgctgacgagcgccgagccgctgctgtcggactggccgaccgctctggtgaca
cctagccccaggcgtgctcctcctgtggacccagagattcttcgtacgatgaaaactgtc
ggctttattggctacgcaccaaaccctcgaacacgccctcgaaaccaggttccttataaa
attaaagatgtggagcttgattatgacaattacagccaggtccccgagtctcctattggt
cgtgaaatagagccgcacctctgcatggtcgccaaaaagtacagaaaggtcaccattaag
tactccaaacttggacttgaggacttcgacttcaaacattacaacaaaactttgtttgct
ggtctggagccgcacatccccaatgcctactgtaactgcatgatccaggtgttgtatttc
ctggagcccatccgatgtctcgtgcagaatcatttgtgccagaaggagttttgtttggcc
tgtgagctcggcttcctcttccgcatgttggatttatctcgaggagatccgtgtcaggcc
agtaacttcctccgagcgtttcgcaccatccctgaagcttcggctctgggtctgatcctc
gcagactccgacgaacaaacggggaaggccaaactcggccgcttaatccagagctggaat
cgcttcatcctcacgcagctccaccaggagacgcaggagcaggagggtccgcaggcctac
aggggggccagcagcagctctctgggctcctccagcgagtcggccgtcgggaagctgttc
ggttgtgaagtggagaacagcagtttgtgccgctgcggcaaggaaacggtgcgatcctcc
ctcacgttgctcttcaccatgcattatcctgagcagagctctcaggaaaaaagcatgaaa
gcgtttgactttgctgagatcctgaagaagagcatctgcttggagcagagcactcaggcg
tggtgtgagaactgtgagaagtatcagcccacagtgcaaacacggaacatccggtgcctg
ccagatgttctggtcataaactgtgaggtgaacagcgccaaagaggctgaattctggaaa
gttcaagcagagtatgcttttaataaagctatgcagaaagaggcaacagaacctgcaaaa
cccactgaaccccctcccatctccacagagtggtgcttaaatggggaggagatctgcagc
gtggacagcttcgcctttgacacccgagcagaagatctgcgccacgtttggatccccgtc
actctgaagatgtccatcagtaaaacccagggtctggaagtcagcagctgctccgaggga
gaggagttgagtgctgctgaagaagctgagggggtttctctgtatgacctggtggtcacg
gtgccccacatccaggacgctcgcaccggtggtaacctggttgcacacatcaaagtgagt
gaaacctaccaccaaagaaaagagggcgtcacgcaccagcagtggtacctcttcaatgac
ttcctaattgaacccattgataagactgaagctgctcagttcgatgtgagctggaaggtg
ccagccatcctctattacgccaagaggaactaccacaccaaatacgacctccgcattaaa
aaccccatcgatgccagcgtgctgctgaccgaggcctcgctggcccggaagcagagaaag
agccatgccaccttcatccccctcatggtcagtgagatgccgcaggccggagacctggtg
gggctggacgctgagtttgtgacactcaatcaggaagaggcagagttgcgcagcgacggc
accaaatccaccatcaagcccagccagatgtctgtggccaggatcacttgcgtgaggggt
caggggcccaacgagggggtccccttcatcgatgattacatctcgacacaggagcaggtc
gtggactatttgacgcagtattctggcatcaaaccaggagacctggacgctaaaatctcc
tcgaagcacttgaccacgctgaagtccacctacctgaagctccgcttcctcatcgacaca
ggagttcgcttcgtgggtcacggtttgcagaaggacttccgggtcattaatttattggtt
ccaaaggatcaagttgttgacaccgtccacctcttccatttgcctcgcaaaagaatgatt
tctttaagattcctcgcttggtattttctcgacctcaacattcagggggaaacccacgac
agcatcgaggacgctcgcaccgccctgcagctgtacaggaagttcctggagctgagccgt
ggaggagtgagcgacgacgtaaggaaggtcctcaagggactgtatgaaaaaggccgccag
ctggactggaaagtcccagattctgatacaggagacagtcaagctagcacgaaaacgata
cagtcagacggaggctggtgttag
DBGET
integrated database retrieval system
