Nematolebias whitei (Rio pearlfish): 119417481
Help
Entry
119417481 CDS
T08042
Name
(RefSeq) E3 ubiquitin-protein ligase Topors
KO
K10631
E3 ubiquitin-protein ligase Topors [EC:
2.3.2.27
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nwh04121
]
119417481
03036 Chromosome and associated proteins [BR:
nwh03036
]
119417481
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
nwh03037
]
119417481
Enzymes [BR:
nwh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119417481
Ubiquitin system [BR:
nwh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
119417481
UBL E3 ligases
119417481
Chromosome and associated proteins [BR:
nwh03036
]
Eukaryotic type
Centrosome formation proteins
Centriole proteins
119417481
Cilium and associated proteins [BR:
nwh03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
119417481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-RING_UBOX
zf-rbx1
zf-RING_5
zf-C3HC4_4
RING_XB3-XBAT31
zf-ANAPC11
PWI
Motif
Other DBs
NCBI-GeneID:
119417481
NCBI-ProteinID:
XP_037540657
LinkDB
All DBs
Position
1:42422890..42430124
Genome browser
AA seq
1305 aa
AA seq
DB search
MPLPARNSSRRRKKKPDNEERTAGDVPAAEVTAPMRMKLRVRRGDAAAASGAGGSVDGTT
ERSREGSRSSSRRKSSNKTSASATVAPASTSSSPPTTSTRAVMAAEETSPDSKCPICLDR
FNNLAYLDHCLHRFCFPCIQEWSHNKAECPLCKQPFASILHSVRAEDDFKEYTLQPPPPN
NSVAATVAMVAAMASAARSDHHMRLMLRRHRVADGRETTTRRRRRERGARGRVSEERARG
VWELYFDHPSLSFPPLSRHLSVSNVAEDSEEAEELVGERVRGGADAADHGALFNQLTGLR
GAAASLASNSRVLRRLMARLAARQRLQREGGTVQRLREGQMLDFRRMLYRCGIRVRGIAG
VNGNPGQQREITAESFHQSSTHLNRLRPWLRRELRVMYGSNSSLVDIVQNIIMARLALHG
LENTLNLEEDLQPFLQARTQHFLHELLSFARSPLNMDSYDLQAVYDPPPAATMELDGLSS
SEGSSVIAISEEEGERGGGSEGTVSNDISDIIQTGSSLSLSGWDDETPGPSYSTAEPSSS
LNPPLPLSPAPQEPAIERGGDGLEEAAEEECLIVGYKKPIAERTPELVQLSSDSEEEQGE
KEEEEQPLEKAPPLPSPTPSSSYLPISPPSTSGAFREEQEVGQKNEEVWGRRPRSWSGSS
GRSRKSVRSLDPASPLRRGDDGQSSKKKKRKKKRRREEGLRRSGTFSNPNRSIYPPMMRR
CSPLLFDSSADSCSPLPSSPDFRCTQVSPLTSPVSSPSCSSSPLCLSPQRTPPTPRSSSV
ELARHVEKPGGKRKYKSRHLNSSTKDPTWRQNGGRQREKRRRRKERPRKEAQQETEESRK
RSRGDRSPSVEIIYEGTVSSNVERPLGHKRRRKRHRRARHSSPPVIITLDSDSSDGRKLL
SGSSSPLSSQHTIDFSDLPPLPLAHSAGVGGALDTAIGELPVEILDRGSDRSEAEAAGPL
AGRINISDNSDVDHMEDDARLQNDAGQTDARGFDPAAGPKPSREDGHGGGDAQVLRPHRV
ESPSDRSLLDAILCDLNRISAAKQDQFQNLESSSSPDARKKTPQDGPETTPDPQGSGLDC
RSSSVPSLPPLDIPPLLKWAGPARSCSRNAPPPLRHKDAGSPQQTAGPPHGPSDPAGVPG
SQAVPPTETLRSHLTNVWALRAELPGSNRTDGPPEFTPHSRAETKIPSPVDSNPVNSSCS
TDPPCGDLTSRGDGLKPSSPDCRVAPVDLHPPSCSADGGPPGLDSNHTAGVQPESPGPPA
HLLLDRRSAERLPADGRFNHVALSPLQHASDSAPGPARSLRTTAL
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
atgcctctcccggcgcggaattcctcccggagaaggaaaaagaaaccggataacgaggag
cgaaccgccggagatgttcctgctgcggaggtgacggcgcccatgcggatgaagctgcgt
gttcgtcggggcgacgctgcagccgcctcaggagcgggcggttctgtagacggaaccaca
gagaggagtcgagagggcagcaggagcagcagcaggaggaaaagcagcaacaaaacctca
gcgtcggccacagtggctcccgcgtccacctcctcttcacctccgaccacctccacacgg
gcggtgatggcagccgaggagacgtcgcctgactccaagtgtccgatctgtctggatcgc
ttcaacaacctggcatacctggaccactgtctgcaccgcttctgcttcccctgcatccag
gagtggtcgcacaacaaggccgagtgtccgctctgcaagcagccctttgcctccatcctg
cactcggtccgcgccgaggacgacttcaaggagtacaccctgcagccgcccccccccaac
aacagcgtggccgccactgtggccatggtggcagcgatggcatcggcggccaggagtgac
catcacatgagactgatgctgaggaggcaccgggtggctgacggcagggagacgaccacg
aggaggcgcaggagggagaggggagctagagggagggtgtcggaggagagggcgaggggt
gtgtgggagttgtacttcgatcatccgagtctttctttccctcctctttctcgccacctg
tctgtctcaaatgtagcagaagacagcgaggaggcggaggagctggtgggggagagggtg
agggggggtgcagacgccgcagatcacggggccctgtttaatcagctgacaggacttaga
ggggcggcggcgtctctggcctctaacagccgggtgttacggcggttgatggcccgcctg
gcggcgaggcagcggctgcagcgggaaggcgggaccgtgcagcggctgagggaggggcag
atgctcgattttcgccggatgctctaccgatgcggcatacgggtccgtggcattgcaggg
gtcaacggtaacccggggcaacagcgcgagatcacagcagagagtttccatcaaagctcc
acccacctgaacagactccgcccctggctgcggcgggagctgagggtgatgtacggctcc
aactcgtctctggtggacatcgttcagaacatcatcatggcccggctcgccctccacggt
ctggagaacacgctgaacctggaggaagacctgcagccgttcctgcaggcgcgcacccag
cacttcctgcacgagctgctgagcttcgcccgctcgccactcaacatggacagctacgac
ctgcaggcggtgtacgatcctccccccgccgccaccatggagctggacgggctcagcagc
tccgagggcagctccgtcatcgccatatctgaggaggagggggagaggggaggaggatct
gagggaaccgtgagcaacgatatcagtgacatcatccaaacaggaagcagcctcagcctg
tcggggtgggacgatgaaacgcctggcccctcctactccacagcagaaccgtcctcttcg
ctcaatcctccgctgccgttaagccccgcccctcaggagccagccattgagcgaggagga
gacggactggaggaggcagcagaggaggagtgtctgattgtcgggtacaagaagccgatc
gcggagcgaactcctgagctggtgcagctctcctccgactctgaggaggagcagggagag
aaggaggaggaggagcaaccacttgagaaggctcctccccttccctcccccactccttcc
tcttcatacctacccataagcccaccctcaacgtcaggtgctttcagggaggagcaggag
gtgggacagaagaacgaggaggtgtgggggcggcgccctcggtcctggtcaggaagttca
ggacgaagcaggaagtcggtgcgctcactcgacccggcatcccctctgcggcggggagac
gacgggcagagcagcaagaagaagaagaggaagaagaagaggaggcgagaggagggcctg
aggaggagcggcaccttcagcaacccaaaccgctccatttacccccccatgatgcggcgc
tgctcccccctgctgttcgactccagcgccgactcctgctccccgctgccgtccagcccc
gacttccgctgcacccaggtctcccccctcacctcccccgtctcctccccctcctgctca
tcctcccctctctgcctctcgccgcagcggacgccaccgacgccgaggagctcctccgtc
gagctcgcccgccatgtggagaagcccggcgggaagaggaagtacaagagccggcacctg
aacagcagcaccaaggacccgacctggaggcagaacgggggccggcagagggagaagagg
aggaggaggaaggagaggccgaggaaggaggctcagcaggagacagaagagagcaggaag
aggtccagaggagaccggagtcccagtgtggagatcatctacgagggcaccgtctcctcc
aacgtggagcggcctctggggcacaaacgccgccggaaacgccaccgcagggcgcggcac
agcagtcctccggtcatcatcaccctggacagcgacagcagcgacggcaggaagctcctc
agcggcagcagcagccccctcagcagccagcacaccatcgacttctctgaccttcctccg
ctcccattggcccactcggcgggggtgggcggggccttggacacagcgataggggaactt
cctgtggagatcctggaccgggggtctgacaggtctgaggccgaggcggcgggaccgttg
gcgggtcggatcaacatcagtgacaacagcgacgtggaccacatggaggacgacgcgcgg
ctccaaaacgatgccggacaaaccgacgcccgcgggttcgacccggcggccggtccgaag
ccgtcccgtgaagatggacacggtggtggagacgctcaggttctccgaccacaccgggtg
gagtcgccctctgacaggtccctgctggacgccatcctctgcgacctgaaccgaatctct
gcagccaagcaggaccagttccagaacctggagtccagttcctcacctgatgccaggaag
aagactcctcaggacggacctgagacaacaccggaccctcagggttcaggtttggactgt
cggagcagctccgtcccctccctgcctcctctggacattcctcctctgctcaaatgggcc
gggccggcccggtcctgcagcaggaacgctccacctccgctcagacacaaagacgcaggg
agtcctcagcagaccgccggcccgcctcacggtccctctgacccggcaggtgtccccggc
agtcaggccgtcccccccacggagacgttgaggagtcacctgaccaacgtgtgggcgctc
cgggccgagctgcccgggtcgaacagaaccgacggaccccccgagttcactcctcacagc
agagccgagactaaaataccttcacctgtcgactcaaaccctgtgaactcctcctgttcc
actgatccaccgtgcggagacttgacctccagaggagatgggctcaaaccctcgagtcca
gactgtcgggtcgctcctgtggacctccacccccccagctgctcagctgatggtggtccc
ccaggactggactccaaccacacagctggggtccagcctgagagtcctggacctcctgct
cacctcctgttggacagaaggagcgcagagcgtctcccggctgacgggaggttcaaccac
gtggccttgtctccgctccagcacgcctcggattctgctccgggcccggctcgcagcctc
agaaccaccgcgctctga
DBGET
integrated database retrieval system
