Nematolebias whitei (Rio pearlfish): 119417751
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Entry
119417751 CDS
T08042
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
nwh
Nematolebias whitei (Rio pearlfish)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
TPT
FN3_Tor_3rd
VWA_2
EamA
YjeF_N
Motif
Other DBs
NCBI-GeneID:
119417751
NCBI-ProteinID:
XP_037540962
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Position
11:complement(44762366..44816542)
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AA seq
1819 aa
AA seq
DB search
MQRWTGKPRVVLKWTDYLRKVAPTALATALDIGLSNWSFLFISISLYTMTKSSAVLFILF
FSLVFKLEEPNPFLILVVLLISSGLFMFTFESTQFNLEGFIMVLLASFIGGIRWTLTQVL
MQKAELGLQNPIDTMYHLQPLMFLGLFPLFLYNEALSLSTSEKLFRVTKLSPLLYSLLTL
SIGGTLAFGLGFSEFLLVSRTSSLTLSISGIVKEICTLLLAAYLGDKMSVLNWLGFAVCL
CGVSLHIGLKTYYSKSKMSLLFASNNFKYSNVRPLFGCHLPEKMLCFLLSVFLLLSSGVH
GQGRLKLTVLSEDRLQMKWKEADGPVQGYKVRVRTTSEEPQPELMLTTTRGRATVAGLDS
SQEYSLQVFVLNGTTEKLLAKRRFTMEGLRDEEMIRSDGRESRKKTLPGGSGSGDLDDVT
ELLVGLPTVRFPDPTKTPAELPDESPEKITTEKRKRKKDKERHRSTAETKEEPGTKQGMS
QRKPYECDSDAAADIMLLVDGSWSIGRTNFRRVRDFLEGLMTPFHIGPDHIQIGLTQYSG
DPRTEWNLNKFSIKDQLLEAVRHFRYKGGNTFTGQALLHVMEENMKSEAGARPEAPFFLV
LLTDGKSQDDAIAAANRLKNAGVEIIAVGVKNADEAELRQVASEPVDLNVYNVNDFPLLS
KLVARLVHILCGRIKDRGITKRMEPVPTADPALSYPSPADLRFSELGSRQVKLHWTNPAK
PVQQYRVVYHSADSQSPQEVVLLGSKSSVLLDGLSSQTLYHISIFPVYEHNVGLALRGTV
TTLPLAMPTSLEAAPSSHSTLRVSWSPAPGATQYMILYSALNDGEPDDAKEEKFSGDQTV
VELAGLLPETDYSVTLYALYDEDPSDPVTFVASTFALPAPVSIQFPVVTHSMLKVSWVPG
AVDVPGHRITYSTNHGSDVKQVEVTGMSSVLVQNLLSLSRYQVSVQSHYPQGLSAALTGN
ITTLKVPSPSDLRVTNFSGSDITVHWQAAADDVVSYLIKWISLSGGDLRQLKVNGDREGA
VLKGVEEDKEYQISLSALYGDGAQSEAVAIRYSTLSGGGPSSVTVSEETAVSLVVRWVPP
NAHVLQYRVTYSPLTGAESQDRTVLVPGGDKQVVLQSLQPDTRYSIFVTAEYRSREGGSG
SAQGKTTSLRVSSVSVVRSDHSSICLSWRPVSAVDGYRIVIQSIKDKQTKQDTVDESSSS
YCFTDLEPETLYRISMHALLGSVEGAAVSILHPTAPAPVRIHVHPQMYPIHNEVCPEVTI
RNSIVKGFDMMEAFGLTPRAHSSVEGVAVEPFVFNTVLTYTLYRDVQLTQSTKFIHAAGF
SPDHTISIAFRVLQDTPREPFALWQLTDIDFQPKMGVVIDPSTKHLTYFSLDYRGEVQEL
TFDQPQVHKLFYGSFHKVHLSVSQVSVSLSVDCQHVGERPARPLGNLPTDGFEMLGKLVK
TRGPNSGSAPFQLQSFEIVCNTTWASEDTCCDLPGVRDEEGCPAPAYRCTCSSDVPGAPG
LPGSIGKPGSRGEKGEKGEQGQKGEVGPPGKPGPEGSLGLVGGAGPRGITVQGKTGPPGA
RGEKGDPGRPGAQGLPGPPGPKGEEGIPGPQGIRGVEGNMGPPGSTGARGFQGIPGHPGP
IGDRGPSGPVGPTGLPGNKGEQGQKGEPQSMAMIYQLVTQACEQLIHKEVLTLDMYINKV
SRKPAPIEEPVGPPGEPGIPGPRGPPGARGNQGNMGSRGRPGRPGYPGEQGRRGLPGEKG
DAGNNIQGPSGIKGFAGPAGESKLGDPGSNGDDGKAGQPGIPGPPGQPGEIGPPGVCDSS
GGCQRVPQQTEDPYYDYQP
NT seq
5460 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgctggacaggcaaaccacgcgtcgtcctgaaatggacagactacctccgtaaa
gtggcgccaacagccttagcaacagcactggatattgggctgtccaactggagcttcctc
ttcatcagcattagcttgtacaccatgaccaagtcctcggcggtgctgtttatcctcttt
ttctctcttgtgttcaagctcgaggaacccaaccctttcctgatcctggtggtcctgctg
atttccagcggtctcttcatgtttacgttcgaatcgacacagttcaacttggagggcttc
attatggtgctgctggcgtccttcatcgggggaatccgctggacgctcactcaggtcctc
atgcagaaagcagagctgggtcttcagaatccgatcgataccatgtaccaccttcagccg
ctcatgttcctcggcctctttcccctcttcttgtataacgaagcgctgagcctgagcacc
tccgagaagttattccgggtgacgaagctctctcctcttctgtattccctcctcaccctc
agtatcggcggcacgttggccttcggtttgggcttttctgagtttctgctcgtctcacga
acctccagcctcactttgtccatatcagggattgttaaggaaatttgcacgctgcttttg
gcagcatacctgggagataaaatgagcgtcctcaactggctggggtttgctgtgtgtctg
tgcggcgtgtcgttacacatcggactcaagacttactattccaaaagtaagatgtctctt
ttgtttgccagcaataacttcaagtattcaaatgttcgaccattgttcggttgtcatcta
cctgaaaagatgctgtgtttcctgctcagtgtcttcctactgctgtcctcaggggtccac
ggccaaggtcgtcttaagctgacggtgctgtctgaggacagactgcagatgaaatggaag
gaggctgatggacccgttcagggctacaaagtccgagtcagaacaacttcagaggaacca
caaccagagctgatgctgaccaccacccggggccgggccacagtagcaggactggactcc
agtcaggaatactctctccaagtcttcgtgctgaatgggaccacagagaaacttcttgca
aaacgacgattcaccatggagggtctgcgagacgaagagatgatccgcagcgatggtcgt
gagagcaggaagaagacgctgcctggcgggtcggggtcaggagatctggacgatgtgacg
gagctactggtgggtctgccaacagttcgattcccagaccctacaaaaacccctgctgaa
ctccctgatgagtccccagagaaaattaccacggagaaaaggaagaggaagaaggacaag
gagcgacatcgttccaccgcggagaccaaagaggagccggggacaaaacaggggatgtct
cagcggaaaccgtacgagtgtgacagcgacgcagcagcagacatcatgctgttggtggat
ggttcctggagcatcggacgcaccaacttcaggcgggtcagggacttcttggagggtctg
atgacgcctttccacattgggccagatcacattcagatcggtctgacccagtacagtgga
gacccccgcacagagtggaacctcaacaaattcagcattaaagaccagctgttggaggca
gtgagacattttaggtacaaaggaggaaacacatttacaggacaggccctgctccacgtc
atggaggaaaacatgaagtctgaggcaggcgcgagaccggaagccccatttttcttggtc
ttgttgactgacgggaagtctcaggacgatgcgatcgcggcagcaaaccggctgaagaac
gcaggcgttgaaatcattgctgtaggtgtgaagaatgcagacgaagctgagctgagacag
gtggcatcagaacccgttgatttaaatgtttacaacgtcaacgacttccccctgctcagc
aaactggtggcacgactggttcacatcttgtgtggaaggataaaagaccgtggcatcaca
aaacgaatggagcccgtgccgacggcagacccagccctctcctacccgagccccgctgat
ctacggttttctgaactcggatccaggcaggtgaagctgcactggaccaatccagcgaaa
ccagtccagcagtacagagtagtgtaccacagtgctgacagtcaaagcccccaggaggta
gtgttattaggctcgaaatcctctgttctgcttgatggcctctcatctcagacgctgtac
cacatctccatcttccctgtgtatgaacacaacgtcggcctggcgctccgaggaaccgtc
acaacactgccgctggccatgccgaccagtttggaggcggctccttcctctcacagcacg
ctgcgagtgagctggagtccagctcctggtgctactcagtacatgatcctgtactcggca
ctcaacgacggagagcccgatgatgcgaaggaggagaaattcagcggtgatcagacagtg
gtggagctcgcagggttactaccagaaacagactactccgtcacactttatgctctctat
gatgaagatcccagcgatccggttacttttgttgccagcacttttgctctcccagctcct
gttagtatacagttcccagtggtaacccacagtatgctgaaggtgagctgggtgcctggc
gccgtggacgtacccggccacagaatcacctacagcaccaaccacggcagtgatgtcaag
caggtggaggtaacggggatgagctcagtcctggtgcagaacctcttgtctctgtccaga
taccaggtttctgtccagtctcattacccacaaggcctgtctgctgcgctcaccggtaac
atcaccacactaaaggtaccttccccatcggacctcagagtgacgaacttttcaggcagc
gacatcactgtccactggcaggctgcggctgatgacgtcgtctcctacctcattaaatgg
atctctctgagtggaggagatctgaggcagctgaaggtgaatggtgacagagaaggagcg
gtcctgaagggagtggaggaagacaaagagtaccagatctctctgtctgcactttatgga
gatggagctcagagtgaagctgtggccatccgctacagcaccttgtcaggaggaggccca
tccagcgtaactgtttcagaagaaactgcggtcagtctggtggtcagatgggtgcctcca
aacgctcatgtcctccagtaccgtgtgacctactcacctctgacaggagctgagagccag
gacagaactgtgttggtgccaggtggtgataaacaggtggtgttgcagtcattacagcca
gatacacgttacagcatctttgtcacggctgagtatcgcagcagagagggaggcagcggc
tcagctcaaggcaaaaccaccagtctgcgagtgagcagtgtcagtgtggtcaggtcagac
cactcaagtatatgcttgtcgtggagacccgtgtctgcggtcgatggataccggattgtc
attcagtccattaaagacaaacaaacaaagcaggataccgttgacgagtccagcagcagt
tactgtttcactgatttggaaccagagacgctgtatcgcatcagcatgcacgcgctgctc
ggctcagtagagggcgctgccgtctccatcctccacccaacagctccagctcccgtcaga
attcatgtccatcctcaaatgtacccgattcataacgaagtttgccctgaagtcaccatc
aggaacagcatcgttaaagggttcgacatgatggaagcgttcggtctgacgccgagagct
cactcctcggtggagggggtggcggtcgagccttttgtcttcaacaccgtcctcacctac
acgctgtacagagacgtgcaactgacccagagcaccaagtttattcacgcagcgggtttt
tctccagaccacaccatcagcatcgccttccgggtcttgcaggatacgcccagggagccc
tttgctctctggcagctcacggacattgatttccagccgaagatgggggtggttattgac
ccttctaccaaacatctgacgtacttcagcctggactacagaggagaggttcaggagctc
acgtttgatcagccgcaggttcacaagttgttctacggaagttttcacaaggttcacctg
tctgttagccaggtgagcgtgtctttgtccgtggactgccagcatgtgggggagagaccg
gctcgtcctcttggtaacctgcccaccgacgggtttgagatgctgggaaaactggtgaaa
acacgaggacctaacagtggatccgccccgtttcagctgcagtcttttgagatcgtctgc
aacaccacgtgggcttctgaagatacgtgctgcgatctgcccggagtgagagatgaggag
ggctgtcctgcacctgcgtacaggtgtacctgttcttctgatgttccaggagctccaggt
ctccccggctctatagggaagcctggatctcgaggagagaaaggcgaaaagggagagcaa
ggccaaaagggggaggtgggccccccagggaagcctggacctgaggggagccttggactt
gtgggcggcgcaggaccacgaggaattacggtgcagggcaaaacgggtccaccaggagca
agaggagaaaaaggagatcctgggcgaccgggagcacaagggttaccaggacctccaggt
ccaaaaggggaggaggggatcccaggcccccagggcatcagaggcgtggagggaaacatg
ggcccaccaggcagcactggagccaggggtttccagggaattccaggacacccaggacct
attggggacaggggtccctcagggcctgtcggacctacgggtctgccaggaaataaaggg
gaacaaggtcaaaagggggaacctcagtctatggccatgatctaccagctggtcacacag
gcctgcgagcaactaatacacaaggaggtgttgacacttgacatgtacattaataaggtt
agtcgaaaaccagctcccatcgaggagccagtaggacccccaggagaacctggtataccg
gggcccagaggtccgcccggtgccaggggcaaccaggggaacatgggctcaagagggaga
cctggcaggcctggatatccaggagaacaaggacggagaggtcttccaggggagaaaggt
gatgcagggaacaacatccaggggccctctgggatcaaaggctttgcaggtcctgctggt
gagtcgaagctgggggacccgggttcgaacggagacgatggcaaggcaggacaaccaggg
attcccggacccccaggtcagccaggcgagattggaccaccgggtgtttgtgacagcagt
ggaggctgccaaagagttccccaacaaacagaagacccgtattacgactaccagccctga
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