Nematolebias whitei (Rio pearlfish): 119417924
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Entry
119417924 CDS
T08042
Symbol
thbs2a
Name
(RefSeq) thrombospondin-2
KO
K04659
thrombospondin 2/3/4/5
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh04145
Phagosome
nwh04510
Focal adhesion
nwh04512
ECM-receptor interaction
nwh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119417924 (thbs2a)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
119417924 (thbs2a)
09144 Cellular community - eukaryotes
04510 Focal adhesion
119417924 (thbs2a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119417924 (thbs2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nwh04131
]
119417924 (thbs2a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nwh04147
]
119417924 (thbs2a)
00536 Glycosaminoglycan binding proteins [BR:
nwh00536
]
119417924 (thbs2a)
Membrane trafficking [BR:
nwh04131
]
Endocytosis
Phagocytosis
Opsonins
119417924 (thbs2a)
Exosome [BR:
nwh04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
119417924 (thbs2a)
Exosomal proteins of colorectal cancer cells
119417924 (thbs2a)
Exosomal proteins of bladder cancer cells
119417924 (thbs2a)
Glycosaminoglycan binding proteins [BR:
nwh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119417924 (thbs2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
TSP1_CCN
EGF_3
TSP1_ADAMTS
cEGF
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
119417924
NCBI-ProteinID:
XP_037541104
LinkDB
All DBs
Position
1:53262484..53282994
Genome browser
AA seq
1184 aa
AA seq
DB search
MILRRSLFLLLLSTFHQVAPQDGEQEDEMSFDLFEISHITRKTLGAKTFRGPNSDAPAYR
FIRFDHLPPVSAPILKQILRQIQNNEGFVFVASIRQDRSSRGTLIGLEGPDGRRQFEIVS
NGRANTLDLIYWVDGSQNVVSFEDVDLSDSQWKNITLHVHGENANLFVGCSLIDSFILDE
PFYEHLQAEGSRMYVAKGSIRENHFRGLLQNVRFIFDTSLEDILQSRDCEVTKQDNENVV
SKSTEVVDVGPSITTNIIGQKTDDLGADMCERSCEELSTMFQELKGLRVVVSNLIDGLQK
VTEENTVMKEALGRMKDSKEKNMCWQDGRLFEDKEDWVVDSCTKCTCQESKIVCHQITCP
PVACASPSLIDGECCPVCMPKDSEDGWSPWSEWTECTVTCGIGTQQRGRSCDATSNPCSG
PSIQTRKCSLGKCDSRVRQDGGWSLWSPWSSCSVTCGEGQITRIRHCNAPVPQLGGKDCE
GSGRETQKCTAKPCPIDGGWGPWSPWATCSATCGGGIKSRSRECNSPQPQYGGKMCIGEA
TDSDSCNKEDCPIDGCLSNPCFGGVDCSSSPDGSWECGPCPAGFRGNGTHCEDINECDMV
SDVCYKVSGTQRCINTDPGFHCMPCPKRYKGNQPFGMGIEAAKRNKQVCEPENPCKDKTH
NCHKYSECIYINHFSDPMYKCECRTGYAGDGFICGEDSDLDGWPNQNLVCSTNSTYHCKK
DNCPNLPNSGQEDFDRDGQGDACDKDDDNDGIPDDRDNCALLYNPRQFDFDKDDVGDRCD
NCPYEHNPAQIDTDHNGEGDACAVDIDGDEIHNDNDNCPYVYNTDQKDTDMDGVGDQCDN
CPLLHNPDQTDVDNDLVGDQCDNNQDIDEDGHQNNLDNCPYVANANQADHDKDGKGDACD
YDDDNDGIPDDKDNCRLTPNEDQQDTDGDGRGDACKDDFDNDSIPDILDVCPENNAISVT
DFRKFQMVHLDPKGTTQIDPNWVVRHQGKELVQTANSDPGIAVGFDEFSAVDFSGTMYVN
TDRDDDYAGFVFGYQSSGRFYVVMWKQITQTYWEDKPSKAFGISGVSLKVVNSTTGTGEN
LRNALWHTGNTAGQVRTLWHDPKNIGWKDYTAYRWHLIHRPKTGFIRVVVYEGKQIMADS
GPVYDKTFAGGRLGLFVFSQELVFFSDLKYECRDKPEFATVFIR
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgattctcaggagaagtctcttcttgttgcttctgtctacattccatcaagtagcacct
caagatggagagcaggaggacgagatgtctttcgacttgttcgaaataagccacatcaca
cgcaagactctaggggccaaaactttccggggcccaaactctgatgcccctgcctaccgc
ttcatccgctttgaccacctgcctccagtcagcgcccccatcctgaaacaaatcctccgg
cagatccaaaacaacgagggcttcgtgttcgtcgccagcatccggcaggatcggtcctcg
cgggggaccctgatcggcctggagggccccgatggtcggaggcagttcgagattgtgtcc
aacggccgcgccaacactctggatctgatatactgggtggacggctcgcagaacgtggtc
tcgttcgaggacgtggacctgtcggactcgcagtggaagaacatcacgcttcacgttcac
ggggagaacgcaaacctgttcgtgggctgcagcctgatcgacagcttcatcctggacgag
ccgttctacgaacatctgcaggccgagggaagccggatgtatgtggcaaagggatccatt
cgggagaaccacttcaggggtcttcttcagaacgtgcgtttcatctttgacacctcgttg
gaagatatcctccagagcagagactgcgaggtgactaaacaagataatgaaaacgttgtg
agtaagagcactgaggttgtggatgtgggtccgtccatcacaacaaacatcataggtcag
aagaccgacgacctcggcgcagatatgtgcgaacgctcatgtgaggaacttagcaccatg
ttccaggagctcaaaggcctccgtgttgttgtcagtaatctcattgacggcttgcaaaaa
gtgacagaggagaacacggtcatgaaggaggccctagggagaatgaaggactctaaagag
aaaaacatgtgctggcaggacgggcgtctgtttgaagacaaggaagattgggttgtagac
agctgcactaaatgtacctgccaggagtccaagatcgtgtgtcaccaaattacatgtcca
ccagtagcctgcgccagcccctctttaattgatggagagtgctgtcctgtgtgcatgcct
aaagacagtgaggatggctggtcaccctggtcagaatggacagagtgcacagtcacctgc
gggataggaactcaacaaagaggccggtcatgtgatgcaaccagcaacccctgcagtgga
ccctcaatacagacccgcaagtgtagcctgggcaaatgcgacagccgtgtacgtcaagat
ggagggtggagtttgtggtcaccatggtcatcttgctccgtgacctgtggggaaggacag
atcaccagaatacggcactgcaacgctcctgtgccacagctggggggcaaagactgtgag
gggagtggacgagagacccagaagtgcactgccaagccatgtccaattgatggtggttgg
gggccttggtctccatgggcaacttgttctgcaacatgtggcggaggaatcaaaagccgt
tcacgggagtgtaacagccctcaacctcagtatggtgggaaaatgtgtattggtgaggcc
acagacagtgacagctgcaacaaggaggactgccccattgatggctgcctgtctaaccct
tgctttggaggagttgactgcagcagctctccagatgggtcctgggaatgtggcccatgt
cctgctggttttcgtggcaatggtacccattgtgaggacattaatgagtgtgacatggtg
tctgatgtttgctacaaagtgagtggaacacagcgttgcatcaacactgacccaggtttc
cactgcatgccctgtccgaagcgctacaaaggcaatcagccttttggtatgggtattgag
gctgccaagaggaacaaacaagtatgcgaaccagagaacccatgcaaagacaagacccac
aactgtcacaaatactctgaatgcatctacatcaaccacttcagtgacccaatgtacaaa
tgcgagtgtcgtactggctacgctggagatggctttatctgtggcgaagactcggacttg
gatgggtggcccaatcagaaccttgtgtgtagtaccaactctacttatcactgcaagaag
gacaactgcccaaatctccccaattctggacaagaagattttgacagagatggtcaagga
gatgcttgtgacaaagacgatgacaatgatggaatcccagatgacagggacaactgcgcc
ctcctttacaatcctcgccagtttgactttgataaggatgatgttggcgaccgctgtgac
aactgtccctacgaacacaacccagcacagatagacactgatcataatggtgaaggtgat
gcctgtgcagtggacattgatggagatgaaattcacaatgataatgacaactgcccctat
gtgtacaacactgaccagaaagacacagatatggatggtgttggggaccaatgtgacaac
tgtccattgctccataatccagaccagactgatgtggacaatgacttggttggagatcaa
tgtgataacaaccaggacattgatgaagatggtcatcaaaacaatctggacaactgcccg
tatgtggccaacgccaaccaagcagaccatgacaaagatggaaaaggagacgcctgtgac
tatgatgatgacaacgatggtatacccgatgacaaagacaactgcagactgacacctaac
gaagaccagcaggacactgatggggatggaagaggagacgcatgcaaagatgactttgat
aatgacagcatcccagatatcctcgacgtgtgtccagagaacaatgccataagtgtgacg
gacttcaggaagttccagatggtccacttggatcctaagggaaccactcaaattgatccc
aactgggtggtgagacaccagggcaaagagctggttcagactgccaactctgacccagga
attgcagtaggttttgatgagttcagtgctgtagacttcagtggaacgatgtacgtgaac
acagacagagacgatgactacgctggctttgtgttcggctatcaatcgagtggacgcttc
tacgtagtcatgtggaagcagatcacacagacttactgggaggacaaaccctccaaagct
tttggcatctctggcgtttcgctcaaagtcgtcaactcaaccacaggaaccggagaaaac
ctcaggaatgctttatggcacacgggcaacactgcaggacaggtccgcactctgtggcat
gaccccaaaaatattggttggaaggattacacagcctatagatggcatctcatccacaga
ccaaagactggctttataagggttgtggtctatgaaggtaaacagatcatggctgactca
gggccagtttatgacaagacgtttgctggaggcaggttaggtttgttcgtcttctcacaa
gaactggttttcttctctgacctgaagtacgagtgcagagataagccggagtttgccaca
gtgttcataagataa
DBGET
integrated database retrieval system
