Nematolebias whitei (Rio pearlfish): 119417976
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Entry
119417976 CDS
T08042
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
119417976 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nwh03000
]
119417976 (arid1b)
03021 Transcription machinery [BR:
nwh03021
]
119417976 (arid1b)
03036 Chromosome and associated proteins [BR:
nwh03036
]
119417976 (arid1b)
Transcription factors [BR:
nwh03000
]
Eukaryotic type
Helix-turn-helix
ARID
119417976 (arid1b)
Transcription machinery [BR:
nwh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
119417976 (arid1b)
Chromosome and associated proteins [BR:
nwh03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
119417976 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
119417976
NCBI-ProteinID:
XP_037541151
LinkDB
All DBs
Position
12:complement(47682532..47705715)
Genome browser
AA seq
1382 aa
AA seq
DB search
MDASPGSATSRTSTSPPPTGTSSGFHHYHGDGGGGPCFDQHGGQQSAGTGLTAAAHSVHG
STMDQVYNTNSQYHHPNLRAGYGTSGHGGMMSPSRQGNSLTGPASKAAMAAPSSPGGFQR
LPGPGQQQQHPSGTTPTLNQLLTSPSAMMRGYGGGYSDYPAEDTGSQYDSAAHGWGGQQR
SLPPSISPGSNGPSSARSQVPPVDPMVMKRSQLYGMSSSPYPQQRGAPYPGQPYGSTFPH
RYQMGMSGRAQTGMGGMQFPQQQMGSQFGQQQNMSGYCQPPYFSPPQQQTTAPSQPPYMQ
PRPLPPQEVPQEAYGGRGKSAAMTPGKPNHEDVGLSQQERPSSLPDLSGSIDDLPTGTEA
AISSGASGSSGSQGSQGSPGARSPFSPHISSRLPLPARTGPSSASSHASSDSQSRSGPLS
PSPSGPGSQLTPQVCGRGSDGGPHSSQSAMTPDRGFPPSMQCSTQGSQFDVPPMSPHPAP
AGPMHHSSYQQSSHSYSQFSPPGNYPRPPHYGGTPSANYSSPGHGLSNSLGPNATSPMHG
QGPSTPASRSLGPNTGGRPYPTGAGSMAPTSPNMPQAAGQGMGPPGPNSNCKPPEMGLNA
GPVANSLSSVSATQGRPPFSRSPVFHQSWQGGRPALSPSPHPPHPSQQGTGAQQLRAVQT
APEHYGQGSYSGMKAMGGPGGPGGPYSHQPGSNSGRMTPQGPPYSAPGLKMMSADLMSPH
GDVKLRIELSREGVGPTADPPRPKDSYSSQFVSQPPSTLCPMSPSSASMSSWVGEDSGSI
SSPSWLRTPPSPKPNVATMTSEKITRLYEMGSEPERRLWVDRYLSFMEERGTPVQNLPAV
GKKPLDLCRFYLAVRGIGGLAMVNKNKKWRELSSLLNLGTSSSSASSLKKQYIQYLFAYE
CKTERGEEPPPDAMLSARDAKKPPSLQARIQPPSPANSGSLQGPNTPQSSSSSLTEAPVE
LRPPTPASTPHSHSGPQSGTRSVGGVSVQDPFSDGNDPAFQNRRAPGPGGGPYQQGGGPA
DPALRMQYETNKEPYRGSRKGPLSKVKGQSPISQLEDEPWCWDEAPLSTAESWQDSLARR
CVCISNIMRNLSFVPGNEAVLSRHPGLVLILGRLVLLHHRHRPRRRTPPNYQREEEQGLA
CSRDEWWWDCVAVLRENTLVTLANMAGQLDLSLYPETVCLPVLDGLLHWMVCPSAEAHDP
FSSAGGFSSLTPQRLVLECLCKLSVQDCNVDLLLATPPFSRQQQLFSALLRLVGERRSQV
CREMAVAVLSNLARGDPTAARAIALQKGSVGILIGFLEDSLAMAQYQQNPQGVLHAALPP
EPPSINMMSRAAKALLAMASVEENRAEFVLFESRLLDMSLSAALNPAVASIMCEVLFKLS
RS
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atggatgccagcccgggatcagccacctccagaaccagcaccagccctcctccgaccggg
accagctccgggtttcatcattatcacggggatggaggaggagggccttgcttcgatcaa
catggcggacaacaaagcgcagggaccgggctaacagcggcggcgcactcggtacacggc
tccaccatggaccaggtctacaacaccaactctcagtaccaccacccgaacctccgggcc
ggctacgggaccagcgggcacgggggcatgatgagcccctcccggcaggggaacagcctg
acgggcccggccagcaaagcggccatggctgcccccagcagccccggagggttccagcgg
ctccccggaccgggccagcagcagcagcacccgtccgggaccacgccgaccctaaaccag
ctattgacgtcccccagcgccatgatgcgcggctacggaggcggctattcggactaccct
gcggaagacacgggctcccagtacgactccgcggctcacggctgggggggacaacaaagg
agtctccccccgagcatcagcccggggagcaacggaccgagcagcgccagatctcaggtg
ccgcccgtggacccgatggtgatgaaacgctctcagctctacgggatgagcagcagcccc
tacccccagcagcggggggcgccgtaccccggacagccctacggatccaccttcccccac
agataccagatggggatgtcaggccgggcccagaccgggatgggagggatgcagttccct
cagcagcagatgggctctcagttcggccagcagcagaacatgagcggttactgtcagccg
ccgtacttcagccccccgcagcaacaaaccaccgcccccagccaaccgccatacatgcag
ccccgcccactgcccccgcaggaagtgccacaggaagcatatggggggcggggcaagtcc
gcagctatgactcctgggaaaccgaaccacgaggatgtgggtctgagccaacaggagaga
ccttcgagtcttccggatctgtccggctccatcgatgacctccccaccggcactgaggcc
gccatcagctcaggggcttctggttccagcggatctcagggcagccaggggtctccaggg
gcccgttcacccttctccccccacatctcatcccgcctcccccttccggctcgaacggga
ccctcttctgcatcgtcacacgccagctccgacagccagtcgcggtctggacctctgtcc
ccctcccccagcggcccagggtctcagttgacccctcaggtctgtggtcgtggatcagat
ggtggtcctcactcgtcccagtcagccatgactcctgacagaggtttccccccctccatg
cagtgcagcacccagggctcccagtttgatgtcccccccatgtcccctcacccagcaccg
gcggggccgatgcaccacagctcctaccagcagagcagccactcctacagccagttcagc
cccccaggtaactatcctcggcccccccactatggcgggacacccagtgccaactacagc
agcccaggacatggactgtccaacagcttggggccgaatgccaccagccctatgcacggt
cagggcccctccaccccggcaagccgcagcctcgggcccaacactggaggccgcccatac
cccaccggagccggctcaatggcccccacctcccccaacatgccacaggctgcaggacag
ggcatggggcctccggggcccaactccaactgcaaacctcctgagatgggcctcaatgct
ggcccagttgccaactccttatcatctgtgagcgccactcagggcagacctcctttttct
cgctcgcccgtcttccaccagtcctggcaggggggtcgacctgccctttctccttcccct
caccctcctcacccctcccagcagggcaccggggctcagcaactacgtgctgtccagacc
gccccagagcattatgggcagggcagctattcaggtatgaaggccatgggaggtcctgga
ggtcctggaggtccctacagccaccaaccaggcagcaactctgggaggatgactccacag
ggacccccctacagtgctcctggtctcaagatgatgtcagcagacctgatgagtcctcac
ggagacgtcaagctgaggatcgagctcagcagagagggtgtgggtcctactgctgaccca
cccagacccaaggacagctacagctctcagtttgtgtctcagcccccctccaccctctgc
cccatgtcccccagctcagccagcatgtcttcctgggtgggggaggacagtggtagcatt
agcagcccttcctggctcaggactccgcccagtcccaagcccaacgtggccaccatgacc
agcgagaagatcacgcgtctgtacgagatgggctcggagccagagaggagactttgggtg
gaccggtacctgtccttcatggaggagaggggtacgcccgtccagaacctgcccgccgtt
ggaaagaagcctctggacctctgcaggttctacctggctgtgagagggatcggaggactg
gccatggtgaacaagaacaagaagtggcgcgagctgtcctccctgctgaacctggggacg
tccagcagctcggccagctccctcaagaagcagtacatccagtacctgttcgcctacgag
tgcaagacggagcgaggggaggagcctccgcccgacgccatgctgtctgccagggacgcc
aagaaacccccgtccctccaggccaggatccagcctccatctccagccaactcgggctcc
ctgcagggccccaacacccctcagtccagcagcagctcgctcaccgaggcccctgtggag
ctgaggcccccgacccccgcctccacaccacacagccactcgggcccccagtctggaacc
aggagcgtgggaggtgtgagtgttcaggacccgttttctgacggcaacgatccagccttc
cagaacaggcgggccccgggtccaggaggtggtccctaccagcagggaggaggtccggct
gacccggcgctccggatgcagtacgagaccaacaaagagccatacagaggctcgaggaaa
ggcccactgtctaaggtcaaaggtcagagtccgatcagccagctggaggacgagccgtgg
tgctgggacgaggcgccgctgtccacggccgagtcctggcaggactctctggccagacgc
tgcgtctgcatctccaacatcatgaggaacctctcctttgtccccggcaacgaagcagtc
ctgtcacggcacccgggcctggttctgatcctgggccgactggtgctgctgcatcaccgc
caccgccccaggaggcggacgccccccaactaccagcgggaggaggagcagggcctggcc
tgcagccgggatgagtggtggtgggactgcgtggcggtgctgcgggagaacacgctggtg
acgctggccaacatggcgggtcagctggacctgtctctgtaccctgagaccgtctgcctg
ccggtcctggacgggctgctgcactggatggtgtgtccgtccgccgaggcccacgacccg
ttctcctcggccggcggcttctcgtcgctcacgccgcagagactcgtcctggagtgtctc
tgcaagctgagcgtccaggactgcaacgtggacctgctgctcgccacgccgcccttcagc
cgccagcagcagctcttctcggcgctgctgcgcctggtgggcgagaggcggagccaggtg
tgccgggagatggcggtggccgtgctgtccaacctggcgcggggcgaccccacggcggcg
agggccatcgccctgcagaaaggcagcgtgggaattctgatcgggttcctggaggacagc
ttggccatggcccagtaccagcagaaccctcagggcgtcctgcacgccgcgctgccgccg
gagccgcccagcatcaacatgatgagccgcgccgccaaggcgctgctggccatggcgagc
gtggaggagaaccgggccgagttcgttctgttcgagagccggctgctggacatgtcgctg
tccgccgccctcaacccggcggtggcgtccatcatgtgtgaggttctgttcaaactgagc
cgctcgtga
DBGET
integrated database retrieval system
