Nematolebias whitei (Rio pearlfish): 119418307
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Entry
119418307 CDS
T08042
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119418307 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwh03019
]
119418307 (cpsf2)
Messenger RNA biogenesis [BR:
nwh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
119418307 (cpsf2)
U7-dependent histone pre-mRNA processing factors
119418307 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
119418307
NCBI-ProteinID:
XP_037541497
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Position
12:complement(40026875..40033682)
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AA seq
787 aa
AA seq
DB search
MTSIIKLTAVSGVQEESALCYLLQVDEFRILLDCGWDENFSMDIIDAMKRYVHQVDAVLL
SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD
SAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCTLESISRPSLLITDSFNATYVQPRRKQRDEQLLTNVMETLRGDGNVLISVDTA
GRVLELAQLLDQIWRTKDAGLGAYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLTLCHSLADLARVPNPKVVLCSQPDLESGFSRELFIQMCENTKNSIILTYRTT
PGTLARYLIDNPGEKMLDLEVRKRVKLEGKELEDYLEKEKIKKEAAKKLVQEQQVDVDSS
DESDMDDDLDQPAAVKTKHHDLMMKSEGSRKGSFFKQAKKSYPMFPVHEERIKWDEYGEV
IRMEDFLIPELQATEEEKNKLESGLTNGDEPMDQDLSVVPTKCISSVENLEIKARITYID
YEGRSDGDSIKKIINQMKPRKLVIVNGSPEASQDLAESCKAFSKDIKVYTPKLQETVDAT
SETHIYQVRLKDSLVSSLQFCKARDTELAWIDGVLDMRVAKVDTGVMVEEGVKEEVEEGE
VPMDVAPELGVDHNATAVAAQRAMKNLFGEDEKELSDESDVIPTLEPLPPNEISGHQSVY
INEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRRTEPGRIGLEGCLCDDYYKIRELL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacatccattatcaagctgacagccgtgtcaggggttcaggaggaatccgccctgtgt
tacctgctgcaggtggatgaatttcgcatcctcctggactgtggatgggacgagaacttc
tcaatggacattattgatgccatgaaacgatatgttcatcaggttgatgcggtgctgctc
tcccaccctgatccaattcatttgggtgccctgccctatgctgtgggcaaactgggtcta
aactgtacaatctatgccacaattcctgtctacaaaatgggtcagatgttcatgtatgat
ttatatcagtctcgaaacaacagtgaggatttcacacttttcacccttgatgatgtggac
agtgcttttgataaaatccagcagttgaaatactctcaaattgtcaatctgaaaggtaag
ggacatggtctttcgattactcctcttccagctggacacatgattggaggaaccatttgg
aaaattgtcaaggatggagaggaggaaattgtgtatgctgtggactttaatcacaagaga
gaaatccacctcaacggctgcacattggagagcattagtcgtccatctttactgataact
gattctttcaatgctacttatgtacaaccacgtcgcaagcaaagggatgagcagctgctt
accaatgtaatggagaccttgcggggtgatggtaatgtccttatttctgtggatacggct
gggcgagtactggagctggcacagctcctggaccagatttggaggacaaaggatgctggg
cttggagcttacccattagctctgctcaacaatgttagctacaatgtggtggaattttcc
aagtctcaggtggaatggatgagtgacaaactcatgaggtgttttgaggacaaaagaaat
aaccccttccagttcagacatctaaccctgtgccacagtctggcagacctggcccgggtc
cccaaccctaaggttgtactttgcagccagccagaccttgagtctggcttctccagagaa
ttatttatccagatgtgtgaaaatacgaaaaattccatcatcctgacctaccgcaccaca
cctggaaccttggcccgctacctcatcgacaatcctggagaaaagatgttggatctggag
gtgaggaaaagagtgaagcttgaaggcaaggagctggaagattatcttgaaaaggagaaa
ataaagaaagaagctgctaaaaaacttgtacaagaacaacaggtggatgtggactcaagt
gatgagagcgacatggatgatgatctggaccagccagctgctgtaaaaaccaagcaccat
gacttgatgatgaagagtgaggggagtcgtaaaggcagtttcttcaaacaagccaagaag
tcttatccaatgttcccagtgcacgaggagaggatcaaatgggacgagtatggagaagtc
atcaggatggaagattttctgattcctgaactgcaagccacagaggaagagaagaacaaa
ctggaatccggcttgacaaatggagatgaacccatggaccaagatctgtctgttgtcccc
accaaatgcatctcaagtgtggaaaatcttgaaataaaagccaggataacatatatagac
tacgaaggccgctctgatggtgactccataaagaagattattaaccagatgaaacccaga
aagctggtaattgttaatgggtcaccagaagccagtcaggatttggctgagtcctgcaag
gctttcagcaaggacatcaaagtctacacacccaaactgcaggaaaccgttgatgccacc
agtgagacacacatttaccaggtgcgtttgaaagactccttggtgagctcattgcagttc
tgcaaggccagagacacagagctggcatggatcgatggcgtgctggacatgcgggtagcg
aaggtggatactggcgtgatggtggaggagggtgttaaggaagaggtggaggaaggtgaa
gtacccatggatgtcgcccccgagcttggcgttgaccacaatgccacggctgtagcagct
cagcgcgccatgaagaacctgtttggagaggatgagaaggagctatctgatgagagtgat
gtcattccaacactggagccgctgcctccgaacgagatttcagggcatcagtccgtgtac
atcaacgagcctcggctgtctgacttcaagcaggtccttctgagggagggcatccaggct
gaattcgttggcggagttctggtgtgcaacaacttggtggccgtgcgcaggacggagccc
ggacgcatcggcctagaaggctgcctgtgtgacgactactataagatccgagagctgctg
tatcagcagtacgctgttgtatag
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