Nematolebias whitei (Rio pearlfish): 119418512
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Entry
119418512 CDS
T08042
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nwh03041
]
119418512 (ddx1)
03016 Transfer RNA biogenesis [BR:
nwh03016
]
119418512 (ddx1)
Enzymes [BR:
nwh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119418512 (ddx1)
Spliceosome [BR:
nwh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
119418512 (ddx1)
Transfer RNA biogenesis [BR:
nwh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
119418512 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
ResIII
Motif
Other DBs
NCBI-GeneID:
119418512
NCBI-ProteinID:
XP_037541746
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All DBs
Position
12:complement(30173581..30180884)
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGRALVKTGGTVFNTWQMNPYDRSSAFAIGPDGLCCQSREFKEWH
GCRTTKGVTKGKYYYEVTCHDQGLCRVGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDTIGCYLDLDKSQISFSKNGNELGLAFDIPQNMRSQAFFASCVLKNAELKF
NFGGEDFKHPPKGGFVALDQAPESHTVKSSQTGSAKVSQAKASSNAPKALIIEPSKELAE
QTFNNVKQFKKFVDNPKLRELLVIGGVAAKEQLAVLEQGVDIVVGTPGRLDDLISTGKLS
LSQVRFLVLDECDGLLSAGYTDFINRIHKQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPETVHHVVVPVNPKSDRLWERLGKNRIRTDEVHAKDNTRPGAN
SPEMWSEAIKVLKGEYAVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDSKGHQF
SCVCLHGDRKPNERKNNLERFKRKEVKLLICTDVAARGIDIHGVPFVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCPNRGRGCYNTQLKEDGGCTIWYNEKELLS
EIEEHLKCTITQCEPDIKIPLDEFDGKVTYGQRRALGGGNYKGHVDVLAPTVQELAILER
EAQTSFLHLGYLPNQLFRAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttttctgaaatgggagtaatgcctgagatagcgcaggctgtggaggagatg
gactggctactacctactgacatccaggcagaatcaatccccctgattcttggtggaggt
gatgtactgatggctgctgaaactggaagtggcaaaacaggagccttcagtatcccagtg
atccagattgtgtatgagactctgaaggaccagcaggaaggcaagaagggcagagccttg
gtcaaaacaggaggaactgttttcaacacctggcagatgaacccatatgaccgtagctca
gcatttgctatcggacctgacggactgtgttgccagagcagagagtttaaagagtggcat
gggtgccgcaccactaaaggtgtcacaaaaggaaagtactactatgaggtaacctgccac
gaccagggtctatgccgagtgggctggtccaccagtcaagcagctctggatttaggaact
gataagtatggctttggttttggtggaactggaaagaagtccaacaacaagcagtttgat
agctatggagaggagtttaccatgcatgacactatcggatgctatctggatctagacaag
agccagatttccttctcaaaaaatgggaatgaattgggtttggcttttgatattcctcag
aatatgaggagccaggctttctttgcctcttgcgttctcaagaatgctgagctgaagttc
aacttcggaggagaagatttcaaacacccccctaagggtgggtttgtcgccctggatcag
gcaccagagagtcacacagtcaaatcttctcaaacaggcagtgccaaagtgagtcaagcg
aaagcttcatcaaacgctcccaaagccctgatcattgagccttctaaagaattggcagag
caaaccttcaacaatgtcaagcagtttaagaaatttgtggataatcccaaattacgggaa
cttctggtgattggtggtgtggctgccaaagagcagctagcagttctggaacagggggtt
gacattgtggtgggaacaccaggcagactggatgatctcatatctactgggaaactcagt
ctgtcccaagtccgctttctggtcctggacgagtgtgatggactcctatcagcaggctac
acagattttatcaacaggattcacaaacaaatccctcaggtcacatctgatggcaagagg
cttcaggttatcgtttgttcggccacactgcactcatttgatgtgaagaagctgtctgag
cgcatcatgcactttcccacttgggtggacctgaaaggggaggactcagttcccgagacc
gtccaccacgtggtggtacccgttaatccgaagagcgaccgtctgtgggagcgcctcggc
aaaaaccgcatcaggactgatgaagttcatgccaaagataacaccaggccaggagccaac
tctccagaaatgtggtcagaagccatcaaggtgctgaagggcgagtacgcagtccgagcc
attaaagaacacaaaatggaccaggctataatcttctgtcgcaccaagattgactgcgac
aacatggagcaatacttcatccagcaaggaggaggtccagacagtaaaggtcaccagttt
tcctgtgtttgtcttcatggagatcggaagcccaacgagaggaaaaataacttggagcgc
ttcaagagaaaggaagtgaagttgctgatctgcacagatgtagcagccagagggatcgac
attcacggagttcccttcgtgattaacgtcaccctgccagacgagaagcagaattatgtc
catcgtatcggcagagtcggacgagctgaaagaatgggacttgccatctccctggttgca
atggaaaaagagaaggtgtggtaccatgtttgcccaaaccgaggcagaggctgctacaac
acccagctgaaggaggacggagggtgcaccatctggtacaacgagaaagagctcctgtca
gagattgaggagcatctgaaatgcaccatcacccagtgtgagccagatatcaaaataccc
ctggatgagtttgacggaaaggtgacctatggacaacgcagagctttgggaggtggaaac
tataagggtcacgtggatgttctggccccgacagtccaggagttggccattttggagaga
gaagcccagacatctttccttcatctgggatacctgccaaaccagctgttcagggccttc
tga
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