Nematolebias whitei (Rio pearlfish): 119418527
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Entry
119418527 CDS
T08042
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119418527 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwh03019
]
119418527 (hbs1l)
Messenger RNA biogenesis [BR:
nwh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119418527 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
119418527
NCBI-ProteinID:
XP_037541762
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All DBs
Position
12:31144541..31181109
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AA seq
699 aa
AA seq
DB search
MSRHRNVRGYNYDEDFEDDDMYGQSVDDDYCISPATANQFIYSRRERQAPKEEPLEEEEY
EVEDVPMSPAVDHNFDPLEQAKLYSCLDHMRTVLGDAMPDSVLTQAAVKHGFDPQRALDA
VLSEDTKTAPVTRGADEQMASVGKVIQEKTPLPERTKQETMAEKAKSRDMSHNKLDSEVV
PKVARMTVSGKKQTMGFDVPRTGENGLVATSVRRGGSPENAAVPEPTSRRPETPSKGSNG
DESSAGATPGRSSGKTRQAINIKTELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLLG
NVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERDRGVTMDVGMTKFETNSKVVTLMDA
PGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHALLVRSLGVTQLAVAV
NKMDQVNWQQERFQEITSKLGHFLKQAGFKESDVFLVPTSGLSGENLINRSSVPELTSWY
TGASLLEQIDAFKAPQRSVDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDKILAMPP
NETCTVKGITLHDEALDWAAAGDHVSLTVTGIDIIKINVGCVFCHPKEPIRVCTRFRARI
LLFNIEVPITQGFPVLLHYQTVSEPATIRKLISILHKSSGEVLKKKPKCLSKGMNAVVEI
QTQRPVSLELYKDFKELGRFMLRYVGSTIAAGVVTEIRE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgccacagaaatgttcgaggttacaactacgacgaagattttgaagacgatgac
atgtatggacagtctgtggatgatgactactgtatatcaccagcaacagccaatcagttc
atctattcacgaagagagaggcaagcaccaaaagaggagcctttagaagaggaagaatat
gaagttgaggatgttcccatgtctcctgcagttgaccacaactttgaccctcttgagcaa
gcaaagctgtattcctgcctggaccacatgcggactgtgctgggagatgcaatgccagac
tcggtcctgacccaggcagctgtaaaacatggctttgacccacaaagggcactggatgcg
gtgctgtccgaagacaccaaaacagccccggttaccagaggtgcagatgaacagatggct
tcagttggcaaagttattcaagagaagacgcctcttccagaaagaaccaaacaggagacc
atggctgagaaagctaaaagcagagacatgtcccacaataaactggattctgaagtggta
cccaaagtggcccgtatgactgtttctggaaagaagcaaacgatgggatttgacgttccc
agaacgggggagaacggcctcgtcgccacttctgttcgacgaggcggcagccctgaaaac
gcagctgttcctgagcccacttcaagacgtcctgagaccccatctaagggatcaaatggg
gatgagtcctctgctggtgccacaccggggcggtcttctgggaaaacccggcaggcgatt
aacatcaagacagaactggagaagagacaagggggaaaacctctgttaaacttggtagtt
ataggtcatgtggatgcaggtaagagtacgctgatgggccacttgctttatctgctgggt
aacgtcaacaagcgcaccatgcacaaatatgagcaggagtcaaaaaaggcaggaaaagct
tcattcgcctacgcctgggttctggatgaaactggggaggagagggacagaggtgtgacg
atggacgtgggcatgacaaagtttgagacgaactccaaagtggtgactctgatggacgca
ccgggacacaaagacttcattcccaacatgataacaggcgctgcacaggcggacgtggcg
gtgctggtggtggatgccagcagaggagagtttgaggccggcttcgaggccggcggtcag
accagggagcacgctctgctggtgcgatcgctgggcgtcacccagctggccgttgctgtc
aacaagatggaccaggtgaactggcaacaggagcggttccaagaaatcacctccaaactg
ggccatttcctaaagcaggcaggattcaaggagtcggatgttttcctcgtccccaccagc
ggcctgtcgggtgaaaacctcattaacaggagttcagtaccggagctcacgtcttggtac
accggagccagcctgctggagcagatcgatgcattcaaagcccctcagcggtctgtagac
aaacctttcagactgtgcgtctcagacgtgttcaaagaccagggttcaggcttctgtgtg
actgggaagatcgaggccggttacattcagactggagacaaaatactggcaatgccgccc
aacgaaacttgcactgttaaaggaataactctccacgacgaggctctggactgggctgca
gcaggagatcatgtcagcctcaccgtcactggcatagacatcatcaagattaatgtcggc
tgtgtgttctgccatccaaaagagccgattcgggtctgtactcgattccgagccagaatc
ctcctcttcaacatcgaggttcccatcacgcaaggctttccagtgttgctgcactaccag
accgtcagcgagccggccaccatcaggaaactgatcagcattctgcacaagagcagcggt
gaagtcctcaagaagaaaccaaagtgtttgagtaaaggcatgaatgctgtcgtggagatc
cagacccagaggccggtgtctttagagctgtacaaggacttcaaagagctgggccgcttc
atgctgcgatacgtcggctccaccatcgctgcgggggtcgtcacagagatcagagaatga
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