Nematolebias whitei (Rio pearlfish): 119418818
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Entry
119418818 CDS
T08042
Name
(RefSeq) polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
nwh04040
]
119418818
04091 Lectins [BR:
nwh04091
]
119418818
Ion channels [BR:
nwh04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
119418818
Lectins [BR:
nwh04091
]
C-Type lectins
Others
119418818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PKD_channel
PLAT
Ion_trans
GPS
Motif
Other DBs
NCBI-GeneID:
119418818
NCBI-ProteinID:
XP_037542039
LinkDB
All DBs
Position
13:11400693..11438593
Genome browser
AA seq
1811 aa
AA seq
DB search
MSPLRGPCLPVEKHEKSPIELHMDHRPRASARSPMWAGYQLSRFIDGSGSLILLWFWSDS
VCILEKISGLRATILKERDDCSGSPCITLGVLFDRGEPVQLHFTLTGDDGSFYETRKMNR
RREIFHIRHPLQASCGDCKNIQPNSVYTIQSQCLPNPFNFDKYDVTVKVAELDQGTQSIC
VTLTPPLDTDNNVRLTCTDGCDQPNQNKDPNIVLNCNDCSNIVWYIEDIRDEDHWDKNTK
DCYKEAQKIPLTEKEDHKSSYKVKKQDISNAKTPNVTVVVIYTRQNVLYYKTYKIKTSYS
GTPDRTTKPPHVASSAPHSTTKPPQVDTTKDDSDPSGGTTKTPSSNTGATTSHAVTSATT
RADTTTSKLTTRKSEDLTCTISPNSGTALDAFKISCSTKSPCFHCWYCFRAKGKRLLCSK
DSEVKAVYLPRGDSSSNYNLLITATAKNVHNSFSTTLTAQVMDFTTNSVDALSTAVANIV
DQLRKEGLLSGELVGEIVNNVAQKLNDQSDESSKEDKQKLREQILRTLIDTINEFPTSTP
TETQVVASGLSSLIMQGDELSLDAQISASNLFANLSLSIVHMNVSSADDKEEIVIAASTI
VKGVSDILEYSSNKEISDALLDTLTNTQSALLNIMDTNEGPTIIIQPHISLYVNRLTPES
LHSAFTSFSNSSYPSFSLPQLPLSLFPSGEPVGVRMLSLDKNPFSWNGRGNISGLIGALS
LTTQDGSGIPVENLSEDIEILLPRPNGEQVNTSVLDLGNYSTTAIDIPSADSTLLLKMVP
SVDPLPFKLFLGYKSYPTETNYVAMTEMPQKGTTLEERYTWILNPTNLKGNSGIHYLVVR
PIVGPGIKSINATLSITPITSSCKFWNETRLDWSDYGCKVGVNSTQLLTQCFCNHLTFFG
SSFFVTPNLVDPSRTAELFATFAENPVVVCFVGALFVTYLLVVVWARRKDIQDTVKVKGT
VLEDNDPIDSYRYMLCVCTGHRIGAATSSQVIVTLLGEQGNSKPHHLTDPKKPLFERGAV
DLFLLTTPYSLGELEGIRLWHNNSGSHPAWFVGNIVVQDLQTEQKWYFLCNSWLAIDMGD
CCLDKLFPVSTETELKKFSNLFFMKTVKDFNDGHLWYSVINRPPSSTFTCVQRVSCCFSL
LLCTMLTSIMFYGIPTDPSDQVMDLGHFQFTWQQFMIGVQSSLIMFPINILIVSIFRNTR
PRETPCCQSKTKKTKSLEHENTLQTVSLQAATNSNGKTSLDNIIKDITRIVHSLSETAKR
NIPFTESEFGSGKGTDINGVLSEVEDFLYQNYKTSDDIHSKSQVQLPGEGIQKKSNKIQH
LYGQMCHLEKELTLLDPSCFSKPESVSRALQRVQSMKSFLEDYLSITSHANQTEHDKSRP
ADKSFGDNGQKKRVRQHGVLPWWFVFVGWLLVIAASFISGYFTMLYGLKFGKERSISWLV
SMIVSFFQSLLFIQPLKVVGLAVFFALVIKKVDEEDFQDVTFEKVERRPGENSQTTNRWA
DCLYEPPPPADIEKMKRNKIMEQKAFALLTEILIYLGFMWMLLLVAYSQRDPNAFYLNQH
IRDSFTGNIPDTVSIQDVFTWAGTSLFQNLFGKYPVAAQFASFYETATADLVLQYLIAFL
VLLSTVKLWHLLRLNPKMNLITTALHRAWRDIANFLVIIVIMLVAFSIASNLIYGWKLYS
YKTFKDSLMTIISLQIGIFNYDEVLDSEPVLGGLLFGSCIIFMSFMVLNLLISVILKALN
EEKIHHKPSEEDEIVDLLLNKICNLFGVNNKSKKDSTGLDVSGSSGLALNNSRDLLIASS
ADVNIYHKSEK
NT seq
5436 nt
NT seq
+upstream
nt +downstream
nt
atgtctccacttcgaggtccttgtctgccagttgaaaaacatgaaaaaagtcccattgag
cttcatatggaccatcggccacgtgcgtctgctcggagtcctatgtgggccggctaccag
ctctcaagattcatcgatggttctggaagtctaattctgctctggttctggtccgattcg
gtttgtattttggagaagatttccggacttcgagccaccatcctgaaagagcgtgacgac
tgttcaggctctccgtgcatcactcttggtgttttgtttgatcggggagaacctgtgcag
ttacacttcaccctgaccggagacgatggctcgttctatgaaaccagaaaaatgaacaga
aggagggagatttttcacatcagacacccacttcaagcgagctgtggtgactgcaaaaac
atacaaccaaactcagtatataccattcaatcacaatgccttccgaatccatttaacttt
gacaagtacgacgtgacggtgaaagtagctgaactggaccagggtacacaatccatttgt
gtcaccctcactccaccgttagacacagacaataatgtaagactcacttgcactgatggc
tgtgatcaaccaaaccaaaacaaggatccaaatattgtattgaattgcaatgattgctca
aacattgtgtggtacatagaggacataagagatgaggaccactgggataaaaatacaaag
gattgctacaaagaggcacagaaaattcctctaactgaaaaagaagaccataaatctagt
tataaagtgaaaaaacaagacatttcaaatgccaaaacaccgaatgttactgttgtagta
atctataccagacaaaacgttctgtattacaaaacctacaaaataaaaacatcatattca
ggtacaccagaccgaaccaccaaaccaccacatgtcgcttcaagtgcaccacattctacc
accaaaccaccacaagtcgacaccaccaaagatgattccgacccttcaggtggtaccacc
aagacaccatctagcaacactggtgccaccaccagccacgctgttacttctgccactacg
cgtgctgacacgacaacttccaagttaaccaccaggaaatctgaagacctcacgtgcaca
atatcaccaaacagcggaacagctttagatgcttttaagataagctgctctaccaaatct
ccttgttttcactgttggtattgttttagagctaagggcaagcgcctgctctgcagtaaa
gacagtgaagtaaaagctgtataccttcctcgtggagacagcagttcaaactacaacctg
ctcataacagctactgcaaaaaacgttcacaattcttttagcaccactctaactgcacag
gttatggatttcacaacaaactcagtggatgctctcagtacggctgtagcgaacattgtg
gatcagctaagaaaagaaggtcttctctctggagaattggttggagaaatcgtcaacaac
gtggcccaaaaactgaacgatcaatctgatgaatcaagtaaagaagataagcaaaagctc
agagagcagatactgcgcactttgattgacacaataaatgaatttccaaccagcacccca
acagaaacccaagttgtagccagcggactctcttctctaatcatgcaaggcgatgaactc
agtttggatgctcagatttctgcatccaatttgttcgcaaacctcagcttatctatcgtg
cacatgaatgtgagctcagctgatgataaggaagaaatagtcattgcagccagcaccatt
gtgaaaggagtgagcgacatcctggagtattcttccaataaagaaatctctgatgctctt
cttgatactctaacaaatacacagagcgcactgttgaacataatggatactaacgaggga
ccaacaataattatacaaccccacattagtttatacgtcaatagactgacaccagagagt
ttacactctgcatttacaagtttttccaacagttcttatccctcatttagtctgccacaa
ttgcctttgagtctatttccttcaggagaaccagtgggtgttcgaatgctgagtttagat
aaaaacccattttcctggaatgggagaggcaatatcagtggactaataggcgctctgtcg
ctcacaacacaagacggatccggtatccccgtggagaacttaagtgaagatatcgagatt
ctgttgccaagacccaatggagagcaagtgaacacctctgttttggatctggggaactac
agcacaacagccatagatatcccttcagctgacagtaccctacttttaaagatggtgcct
tcagtggatcctttacccttcaagttgttcctcggttataagagttaccccacagagaca
aattatgtagcgatgacagaaatgcctcaaaagggaacaacacttgaggagcgatacaca
tggattctcaatcccacaaatttaaaaggaaattctggaatccattatcttgtggtgagg
cctattgtgggtccaggaataaaatctatcaatgccactttatcaattacccccatcaca
tcttcgtgcaaattttggaatgaaacacgactggactggagcgattatggttgcaaagtt
ggtgtgaattccacacaattgctcacccagtgcttctgcaaccacctcacgttttttggg
agctctttctttgtgactcccaatctcgtcgacccgtcacgcaccgctgagctttttgca
acctttgctgagaatcctgtcgtagtgtgctttgtcggcgcgctcttcgtgacctacctg
cttgtggttgtgtgggcacgcagaaaagacattcaagacacggtcaaggtaaaggggaca
gtgcttgaggacaatgaccctatcgacagttatcgctatatgttatgtgtctgcactgga
catcgtataggagccgccacttcttctcaggttattgtcactcttctgggtgaacaagga
aacagtaagccccaccacctgactgacccaaagaagcctctgtttgagaggggtgccgtg
gatttgtttctgctaactacaccctactctttgggggagctggagggaatcagactatgg
cacaacaactcaggaagtcaccctgcttggtttgttggcaatattgtggtccaggattta
caaactgaacagaaatggtatttcttgtgcaattcctggcttgcgatagacatgggtgat
tgctgcctcgataaactctttcctgtttcaacagaaacggagctgaagaaattcagtaat
ttgttcttcatgaagacggtaaaggatttcaatgatgggcacctctggtactctgtgatt
aatcgaccaccaagcagcacctttacttgtgtacagagggtgtcttgctgtttctccctg
ctgctctgcaccatgctgaccagcatcatgttctatgggatccccacagacccctctgat
caggtcatggacttgggtcactttcaatttacctggcagcagtttatgattggagtccag
agttccctcattatgtttccaataaacatcctcatagttagcatcttcagaaacactcgt
cctcgggagacgccttgttgtcagagtaaaacaaagaaaacaaaaagccttgaacatgag
aacactttacagaccgtttccttgcaggcggctacaaactctaatggaaaaaccagttta
gacaatattataaaggatatcactagaatagtccattcactttctgagacagcaaaacgc
aacatccccttcacagagtctgagtttggatctggaaaaggaactgatatcaatggagtt
ctgtctgaggtagaagacttcctctatcagaattacaaaaccagtgacgacatccactca
aaatcacaagttcagctaccaggggagggaattcaaaagaaaagcaacaaaattcagcat
ctgtacgggcaaatgtgtcaccttgaaaaggagctgactcttctggacccctcctgcttc
tccaaaccagagagcgtcagtcgggctctgcagcgagtccagagcatgaagagcttcctt
gaagattatctctcaataaccagccatgcaaaccaaactgaacatgacaagtccaggcca
gcagataagtcttttggagacaatggtcagaaaaagagagtgcgccaacatggagtgcta
ccctggtggtttgtctttgttggctggctgttagtgattgcagccagtttcatatctggg
tattttacaatgctttatgggttgaagtttggaaaagaacgctccataagttggttggta
tccatgatagtttccttctttcagagtcttctcttcattcagccactgaaggtggtaggt
cttgctgtcttctttgcattggtaataaagaaagttgatgaggaagactttcaagatgtg
acttttgaaaaagttgaaagacgtccaggtgaaaacagccaaacaacgaacagatgggct
gactgtttgtacgagccacctccacctgcagatattgagaaaatgaaaaggaacaagatc
atggaacagaaggcgtttgcgctcctcactgagatccttatctacttgggcttcatgtgg
atgttgctgctggttgcttatagccaaagagatccaaatgcattttacctgaatcaacac
attagggatagcttcactggaaatatcccagacaccgtgagcattcaggatgttttcaca
tgggccggcacctctctgttccaaaacctgttcggaaaatatccagttgcagcccaattt
gccagtttttatgagacggctacagctgacctggtgcttcagtatttgatcgccttcctg
gtccttctgtccaccgtcaaactgtggcaccttctcaggctgaaccccaaaatgaacctg
atcaccactgctctgcatcgagcctggcgtgacatcgctaattttcttgtgatcattgtg
atcatgttagtggcgttctccatcgcaagcaacctgatttacggttggaagctttactcc
tacaaaaccttcaaagattctctcatgaccatcattagtttgcagataggcatctttaac
tatgacgaggtcttggacagtgaacccgttcttggtggcttactctttggttcctgtatt
atcttcatgtcgttcatggttctcaatctcctcatttctgtgattctcaaagcactaaac
gaggagaaaattcaccacaagccttcagaagaggatgagattgtcgacctcctgctgaac
aaaatctgcaacttatttggcgtcaacaataaaagcaaaaaggactccacggggctggat
gtgagtggcagcagtggcttggctctcaataacagcagagatttactcatcgcctcctca
gctgatgtcaacatttatcacaaatctgaaaagtga
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