KEGG   Nematolebias whitei (Rio pearlfish): 119418891
Entry
119418891         CDS       T08042                                 
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
nwh  Nematolebias whitei (Rio pearlfish)
Pathway
nwh04510  Focal adhesion
nwh04512  ECM-receptor interaction
nwh04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:nwh00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    119418891 (col4a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    119418891 (col4a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    119418891 (col4a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:nwh04147]
    119418891 (col4a1)
   00536 Glycosaminoglycan binding proteins [BR:nwh00536]
    119418891 (col4a1)
Exosome [BR:nwh04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   119418891 (col4a1)
Glycosaminoglycan binding proteins [BR:nwh00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   119418891 (col4a1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 119418891
NCBI-ProteinID: XP_037542111
LinkDB
Position
13:complement(25365949..25419969)
AA seq 1636 aa
MLLPSGALLLLAAFCSNLDLTRAEGCGTSCGKCDCSGVKGAKGERGFPGLQGNMGFPGMQ
GHEGPPGPMGPKGDFGAHGAPGLKGVRGPPGLPGMPGNPGLPGINGNDGPPGSPGIPGCN
GTKGDRGRDGSSGFPGLQGPPGIPGSPGMKGDPGGVIGIVPLKGEQGFPGTPGLPGSPGL
NGPTGPPGPRGYQGLKGDAGPPGPPGEKGDRLSFVGEKGEKGDPGLRGPPGPPGRPEEVG
GTTTVFIPGPPGFPGVKGERGDKGFCLPYQLGVKGEPGPPGPRGKPGKDGDNGLKGEKGF
AGAPGFPGSTGVKGDRGPPGNGGGPPGFPGPPGPAGSSGEKGFPGPQGEPGPPGQHFEGP
RGEKGQKGEVGVKGDRGIEGQSFPGPPGKQGPVGPPGPPGPPIDLEECNIGKGDPGPPGP
PGLTGEVGHKGDKGDACLSCEGTGPPGPEGVKGEQGPPGPGGFKGEKGRPGFPGEPGTPG
SAGSPGLMGAPGAVGEPGDIYIAPGFKGEKGLPGHPGLQGQPGQDGLQGRDGLQGLQGPK
GEPAKEGIKGERGPDGDPGLIGPPGERGPPGLPGYARPGEPGEKGSQGRPGVHGSPGPPG
AKGDPGVGVSTPGPQGAPGPRGETGLPGLQGDRGPPGDSGLPGFPGEKGDHGLPGIGFPG
PAGPKGISGIPGTTGLPGEPGKPGQDGSPGKPGPPGQKGEPGRGLPGPKGVQGYTGVTGF
SGEKGNVGFPGVPGREGQTGPPGPQGLKGEVGPPGLSGPAGPPGPPGKGLPGPPGPHGPR
GEPGPFGVEGIKGDKGYPGPPGLDMPGPQGEKGSPGLPGIQGSKGLPGPPGLQGIDGPTG
NQGSKGEMGIMGTPGTPGFPGQPGIPGSPGSRGDPGFTGSRGDIGDPGLKGDRGDKGLPG
PPGNLTKVEMEHLKGQKGDIGDPGHPGVTGERGYEGSQGDPGMPGKDGAPGLPGHQGDKG
DPGFPGEPGVTGAPGPKGTVGEMGIPGPIGPKGTKGSIGTPGHTGFRGTDGEKGDPGVPG
EPGIGLPGHPGEQGQTGQPGFPGPRGDKGEKGQEGMPGKPGLQGAKGDHGSTGYPGQPGR
PGDKGITGLPGSAGDPGRDGRPGEGGLQGPPGVRGEKGEPGEDGIPGSTGERGDPGLPGV
GLPGPPGTLGVKGDKGGAGVPGMPGHPGIPGLRGDKGLPGPLGPQGEPGEPGPPGISVEG
PKGERGETGAVGETGSSGAPGPAGVPGRDGQKGETGAPGLPGYQGESGHKGDPGTPGLPG
PTGLPGIDGQKGERGLQGVPGFPGTKGSVGDAGFKGEGGDRGFPGEKGNEGLPGPPGPQT
FIKGDIGFPGNPGLPGPQGPSGFLGQKGQQGLTGIPGPKGDDGLPGFNGQSGAKGEPGLP
GPQGPRGHPGPPGPDGVPGQVGPPGPSSMYHGFLVTRHSQAVDIPLCPYGTRLIYDGYSL
LYVQGNERSHGQDLGTAGSCLKKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPMPMSM
APITGDSIKPFISRCVVCEAPAMVIAVHSQTIMIPPCPEDWDSLWIGYSFVMHTSAGAEG
SGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDSDMFRKPVPTTLKAG
NLQTHISRCQVCMKRT
NT seq 4911 nt   +upstreamnt  +downstreamnt
atgctgttaccgtccggcgcgctcctgctgctggcggctttctgctccaacttagacctg
acacgggctgagggttgtggaacgtcatgtggaaaatgcgactgcagcggtgtcaaagga
gcgaagggtgagcgtggatttcctggtcttcaaggtaacatgggattcccagggatgcag
ggacacgaggggccaccagggccaatgggccccaagggagattttggtgcacatggagct
cctgggctgaaaggagtgcgaggccctcctggtctgccaggcatgccaggaaacccagga
ctacccggcatcaatggaaacgatggtccacctggttcgcctggtatcccaggatgcaat
gggacaaaaggggatagaggacgtgatggttcttctggttttcctggacttcaaggccct
cctggcatcccgggatctcctggaatgaagggagaccctggtggtgtgattgggattgtt
cctttgaaaggagaacaaggatttcctggcacacctggattacctggatcacctggtctt
aacggacctactggaccaccaggacctcgagggtatcagggacttaaaggtgacgccgga
ccccccggccctccaggagaaaaaggagaccgcttgtcttttgtgggtgaaaaaggagaa
aagggagatccaggactcagaggtcctcctggtccccctggacgtcctgaggaagtggga
ggaacgaccacggtgttcatacctggaccaccggggttcccaggagttaaaggagaaaga
ggagacaaaggattttgcctgccttatcagcttggggtcaaaggtgaacctgggccaccg
ggaccacgtggtaaacctggaaaagatggagataatgggctgaagggggagaaaggcttt
gcaggagctcctggattccccggttcaacgggagtaaaaggagaccgaggaccacctggt
aatggtggtggtccacctggctttcctggcccgcccggccccgcaggttcatcaggagaa
aaaggttttccaggtcctcaaggagagcctggtccaccaggtcaacattttgaaggtcct
cgaggagagaaaggtcagaagggagaagtgggtgtgaagggcgacaggggcatagaagga
cagtcttttcctggaccaccagggaaacaaggaccagttggaccccctgggccacccgga
ccaccaattgacctagaggagtgtaacattggaaaaggagaccctggcccacctggacct
ccagggttaacaggagaagtaggacacaaaggtgataaaggagacgcctgccttagctgt
gagggtactggtccacctggaccagagggtgtcaaaggagagcaaggacctccaggtccg
ggtggttttaaaggagaaaagggtcgtcctggcttccctggagaacctggaactcctggc
tctgcaggaagtcctggactgatgggagcccctggtgctgttggtgaaccaggagacatt
tacatagcaccaggttttaaaggggaaaaaggtcttcctggtcatcctggtttacagggg
cagccaggtcaggatggacttcaaggaagagatggcctccagggtctacagggtcccaaa
ggagaaccagccaaagagggtatcaaaggtgagcgtggacctgatggggaccctggtctt
atcggacccccaggagaaaggggtcctccagggttaccaggatacgcccgaccaggagag
cctggagagaaggggagtcagggaagaccaggagtgcatggatctcctggaccacctggt
gcaaaaggtgatccaggtgttggggttagtactcctggacctcagggggcacctgggcca
cgtggagaaactggtctacctggacttcaaggtgacagaggtcctccaggagattcaggg
ttaccaggttttcctggagaaaagggtgatcatggactaccgggcattggatttcctggt
ccagcaggtcctaaaggtatcagtggaattccaggaaccacaggattacctggagagcct
ggaaaaccaggacaggatggctcgcctggaaagcctgggccccctggacagaaaggtgaa
cctggacgaggtcttccaggtccaaaaggtgtacagggctacacaggagttacaggtttc
tcgggggagaagggtaatgttggatttccaggtgttcctggacgtgaaggacagacagga
cctccaggacctcaaggtcttaaaggggaagttggacctccgggactttctggaccagct
ggcccaccaggacctcccggaaaaggtttacctggacctcctggaccacatggaccacgt
ggagagcctggaccttttggcgttgaaggtataaagggagataagggttaccctggtcct
cccggtcttgatatgccaggccctcaaggagagaaaggaagtcctgggctcccaggaatc
caaggttctaaaggactcccagggccaccaggattacaaggcatagatggaccaactggg
aaccaaggttcaaaaggtgaaatggggatcatgggaacaccaggaaccccaggatttcct
gggcaaccagggatacctggatctcctggttcgagaggtgatcctggttttactggatca
agaggagatattggagatcctggacttaaaggtgacaggggagataaaggtcttccagga
cctcctgggaacttgaccaaggttgaaatggagcacttgaagggccaaaagggagacatt
ggagacccaggccaccctggtgtcactggagaaaggggctatgaaggatcccaaggagac
cctggaatgcctggcaaagacggggctcctggattacctggacatcaaggtgataaagga
gatcctggttttcctggagagcctggcgtgacaggagcaccgggtcccaaaggcactgtg
ggcgagatgggaataccaggtccaattggtccaaagggtactaaaggaagtattggtaca
ccgggtcatacgggattccgaggcacagatggtgaaaagggagacccgggagtacctggt
gagccaggtattggtcttcctgggcatccaggagaacagggtcagactggccagccaggg
tttccaggaccacgtggggataaaggtgagaagggtcaagagggaatgcctgggaaacct
ggactgcaaggagccaaaggagatcatgggagcaccgggtacccaggtcagcctggtaga
ccaggagataagggtatcactggactccctgggtctgcaggagacccaggtcgtgatggc
cgtcctggtgaaggtggtctacaagggcctcctggtgttaggggagagaagggggagcct
ggagaggatggcatccctggatccaccggggagagaggagacccaggtctacctggtgta
ggtttgcctggaccacctggaactcttggtgtcaaaggtgacaaaggtggtgcaggtgta
cctggcatgccaggtcatccaggtatccctggcctcagaggagacaaaggacttccaggc
ccactgggaccccagggagaaccaggagagccaggtcctccaggcatctctgtagaaggc
cccaaaggagagaggggagaaacaggagcagttggtgaaacaggatcctcgggagcacca
ggacctgctggtgtgccaggcagagatggacaaaaaggagagactggtgctccaggttta
cctggttaccagggagagtcaggacacaagggagaccctggaactcctggacttcctggt
ccaactggactccctggtattgacggtcagaagggagaacgaggattacagggtgttcca
ggcttcccaggtaccaagggttctgttggggatgctggattcaaaggagaaggaggtgac
cgaggattccctggagaaaaaggtaatgaaggtcttcctggcccccctggcccccagacc
ttcatcaaaggagacattggtttcccaggaaatccaggattgcctggtccccagggccca
tctgggtttcttgggcaaaaagggcagcaaggtttgacgggtattccaggtccaaaaggt
gatgatgggctccctgggtttaacggtcagtcaggagcaaaaggagagcctggtctgccg
gggccacaaggacccagagggcatcctggccctccaggacccgatggtgttccaggtcaa
gtgggtccacctggcccatcctccatgtatcatggcttcctggtgactcgtcacagccaa
gcagtggacattccattatgtccttatgggactaggctgatatacgacggctactcttta
ctttatgtgcaaggcaatgaacgctcccatggacaagacttgggtacggcaggcagctgt
ctaaaaaagttcagccctatgcccttcctgttctgcaatatcaacaacgtttgcaacttt
gcctctcgtaatgattattcctactggctcacctcacccgagcccatgcccatgagcatg
gcacctattaccggggacagcatcaaaccctttataagcagatgtgttgtgtgtgaagct
ccagccatggtgatagctgttcacagtcagaccatcatgatcccaccatgccctgaagac
tgggactctctgtggattggttactccttcgttatgcacaccagtgcaggtgctgagggt
tcgggccaggccttggcctctcctggatcctgtttggaggagttccgtagcgctccgttc
atcgagtgtcatggtcgaggaacctgcaactactacgccaactcctacagcttctggctc
gctaccatcgaagacagtgacatgtttaggaaacctgtcccaacaactctaaaagcaggc
aatctccaaacccacataagccgctgtcaggtgtgcatgaagaggacataa

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