Nematolebias whitei (Rio pearlfish): 119419559
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Entry
119419559 CDS
T08042
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
119419559 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwh03019
]
119419559 (bard1)
04121 Ubiquitin system [BR:
nwh04121
]
119419559 (bard1)
03036 Chromosome and associated proteins [BR:
nwh03036
]
119419559 (bard1)
03400 DNA repair and recombination proteins [BR:
nwh03400
]
119419559 (bard1)
Messenger RNA biogenesis [BR:
nwh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
119419559 (bard1)
Ubiquitin system [BR:
nwh04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
119419559 (bard1)
Chromosome and associated proteins [BR:
nwh03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
119419559 (bard1)
DNA repair and recombination proteins [BR:
nwh03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
119419559 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
Ank_2
zf-RING_6
Ank_4
Ank_3
Ank_5
BRCT_2
BRCT
zf-RING_5
zf-RING_10
zf-C3HC4_3
PTCB-BRCT
zf-RING_UBOX
DNAPKcs_CC3
Motif
Other DBs
NCBI-GeneID:
119419559
NCBI-ProteinID:
XP_037542832
LinkDB
All DBs
Position
13:complement(17163625..17191064)
Genome browser
AA seq
804 aa
AA seq
DB search
MDGNSSLQTEEWKNTKQAVANFRTLLLCSKCSDLMKEPVCLGTCEHMLCRSCAGPQAGDG
CVVCHSPAWVKDIQINRQLSGIVQLFSDLESLLNSTEQPDSSAAEVQTQPETAVLKHKKN
FKIWFSPRSRKVRCKVEKPSEVDVPDVQSSAEVAASQLRTDTALCQDLSVFNFTSSSQDS
SSSSQKCSNVNKKGKKRSKKTATSSHVQKPTKTTRRQTKQNIKKQKLEAINQQWGITEEE
PAPSKPEKPCADGARRSSKRVSFLSPPVTSDEPQLAAPQSNTNKVSPASSTTKRSHSKDR
INASNYQTEPGQSTLNEKLSANDSYPSDSLEKLENISPPENPSKRRGREEKACTLENTPK
RPRASPCRRTKSLGRISPAVINRLSSASPRSDKSSKTSREERGSPSVIDSVSIEVHSKSP
CSPGSSVGRSSSGSPAVMKRNHKGETPLHLAAIKGDIEAVKDLLDQGADPNLKDNAGWTP
LHEACNLGHLPVVEVLVSRGALLNTTGYENDSPLHDAVRNGHAAIVKRLLQLGALQNVLN
LHGKRPADYAVSQEMLEIFQEAAAEGTQYANSHASHSPSATLSAVSDCVKRDQIVVFLPT
KLSQPQQHQLAKLEDLLGGKMVDTFSGSVSHVVVPEGQMPTTYSTLLGILAGCWIVKYSW
VKACLQAGEWLPEAEYEAGEGPQRSRINKCSLLPPLFDGCFFFLLGSFKAPTKDQITKLL
REGGGQLLSRQPKPDSDVTQTLDAAAYHAQPGSDQALCTQYIIYDQQGAFRPAVVRRGKV
WSAPSTWVIDCIAAFCLLSVPDPS
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atggatggaaactcctcactccagaccgaggagtggaaaaacaccaaacaggcggtcgca
aacttccgcacactactgctttgctccaaatgctctgatctgatgaaggagcccgtctgt
ttgggcacgtgcgagcatatgctgtgcaggtcttgtgctggcccccaggcaggggacggc
tgtgtggtgtgtcacagccctgcgtgggtgaaggacatccagatcaacagacagctcagc
ggcatcgtacagctcttcagtgatttggagtccctgctaaattccacagaacaacctgac
tcatctgctgctgaagtccaaacacaacctgagactgcagtcttaaaacacaagaagaac
tttaagatctggttcagtccacgcagtcgtaaggtgcgatgcaaggtggagaagccttca
gaggtcgatgtaccagacgtccaatcttctgctgaagtggctgcatcacaactaagaacc
gatactgctctgtgccaagacctgtcagtttttaattttacttcatcctcccaggactct
tcttcttcgtctcaaaaatgcagcaacgtaaacaaaaaaggaaagaagaggtctaagaaa
actgctaccagcagccatgtgcaaaaaccaactaaaaccacacgtagacagacaaagcag
aatataaagaagcaaaagctggaggccataaaccaacaatggggaataacagaggaagag
cctgctccatctaaaccggagaagccctgtgctgatggagcaagaaggtctagtaaaagg
gtttctttcctcagccctcctgtcacctcagatgagcctcagcttgcggcaccacagagt
aacacaaacaaagtcagtcctgccagcagcacaaccaaaaggagtcactcaaaagacagg
ataaatgcatcaaattaccaaactgagcctggtcagagcacgctgaacgagaaactatct
gcaaatgactcttatccaagtgacagtctcgaaaaattggaaaacatatctcctccagag
aatccctcaaaaagaaggggaagagaggagaaagcctgcaccttggagaatactccaaaa
agaccgagggcttctccatgccgtaggacaaaatcattgggtcggatatctccggctgtc
atcaaccgtttatcttcggcaagccccaggagtgataagagcagcaaaacctccagagag
gaaaggggtagtccctctgtcatagactctgtgtctatagaagtccacagcaaatctccg
tgtagtcctggatcatctgtcgggcgatcaagctctggaagtcctgcggttatgaagaga
aaccacaaaggagagaccccgctgcatctcgctgcaattaagggagacatagaggctgtc
aaggatctgctggaccagggagctgaccccaacctcaaggataatgctggatggacacct
ctgcatgaagcgtgtaacctgggccacctgccagttgtcgaggtgctggtctccagagga
gccttgctgaacacaactggctatgaaaatgactctccactccacgatgctgtaagaaat
ggacatgcagccattgttaaacggcttctgcagctcggggctttgcagaatgtccttaat
ctgcatgggaagcggcctgcagattatgcggtgagccaggagatgttggagattttccag
gaagctgctgctgaaggaacccagtatgctaattctcatgcatctcatagcccctcagcc
actctctctgcggtgagtgactgtgtgaaaagagatcagattgtggtgtttttgcccacc
aagctgtcgcaaccacaacaacatcagttggccaaactagaagatcttctgggaggaaaa
atggttgacaccttttctggctcagtgagccatgttgttgtgccagaaggacaaatgccc
accacctactccaccctcctgggtattctggcgggctgctggattgtcaaatacagctgg
gtgaaagcatgtctgcaggcaggggagtggctgccagaagctgagtatgaagcaggagaa
ggccctcagcgcagtcgcatcaacaaatgcagcttgctcccaccgctcttcgacggctgc
ttcttcttcctcctcggctccttcaaggctccaaccaaagatcagatcaccaagctgcta
cgagaaggaggcggacaactgctgagccgccaaccgaaaccagacagcgacgtgacgcag
actctggacgcagcagcctaccacgcccagccaggctccgaccaggccctctgcacccag
tacatcatctatgaccagcagggagctttcaggcctgcagtggtcagacgggggaaggtg
tggtctgctccctccacctgggtcattgactgcatcgcagcgttttgcctcctctctgtg
ccagaccccagttaa
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