Nematolebias whitei (Rio pearlfish): 119419640
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Entry
119419640 CDS
T08042
Symbol
si:ch211-199f5.1
Name
(RefSeq) protocadherin-8
KO
K16499
protocadherin delta 2
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
nwh04515
]
119419640 (si:ch211-199f5.1)
Cell adhesion molecules [BR:
nwh04515
]
Cadherins
Protocadherins
119419640 (si:ch211-199f5.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
FctA
TMEM154
Motif
Other DBs
NCBI-GeneID:
119419640
NCBI-ProteinID:
XP_037542925
LinkDB
All DBs
Position
13:22920435..22924077
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AA seq
979 aa
AA seq
DB search
MIRRAFRTYWHRWLVIVSLHHLLFTRWALSEGNTVRYQTREEDAPGTVIGNLAKDMSLSL
SHASKTNFRMMKQFNDSFIRVRESDGQLSVGERIDRERICRHTPQCLITFDVVNFSKDRY
KLIHVEVEVKDINDNSPEFPSRESVVEISENAALGSRIPLDPAVDADVGSNYIQSYQISV
NSHFTIDVLLRADGVKYAELVLMKELDRETQSSYNVDLVATDGGNPHRSGSTKITIKVTD
FNDNSPVFDKKSFSVSLPEDAPVGAIILDLNAVDADEGLNGEVVYGFGKQVSHEIRELFQ
VDHKSGRLTLRSPVDFEDKSTYELDVQATDLGANPTPSACKIIIHVTDVNDNAPEISITP
MTSVGTGVAHISEAAEKDSLVALISTLDRDSGINSQIHCTLYGHDHFKLRQAHEDSYMIV
TAAALDRERISEYNLTVMAEDFGSPPLRKISQFTIRLSDENDNAPHFAKSVYEVSVVENN
APGAYITTVEASDADLGNNGKITYRLLDSVIMGSPVNTFVSLNSVSGSIYALRSFNYEVM
KQLDVHIQASDGGSPQLQSTAIIRLKIVDQNDNQPYIIKPPLYKGSAEIFLPKDAPAGYV
VTQIRATDADEGVNAQLSFKITEGGHLGFSINKDTGKVLVSRQLTYDISDNVKVTVAVSD
NGSPSLTSSAMIIFSFIEGTLPSLPSLAQNDNEEVFEWDMSIAIIIVLAGSCSILLLAII
LITTICSRRKKETREAGFDNKVDMPDVEKVESGQIDSMIANHKGKTFDVHPFPEGPPVAG
TTTETSCEESRQTAGMFESNSRTMEGKLKGYSTLPGYGKETVRPITIWKGNSFTTISARD
PQISGKDSGKGDSDFNDSDSDISGDVHKKESPPMNSLWACTSECKVLGHSDRCWSPSAAR
PNTSLACGPHLSTFSKTATLPRDARRENYYPAHLPKTGGLQSVYEKVQHQEFDYILVGPP
TPARIQETDEMSIPEYTNS
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgatacgaagagcgtttagaacttattggcaccgctggcttgtgattgtttccctccat
caccttttatttacccgctgggctctcagcgaggggaacacagtcaggtaccagaccaga
gaggaggacgcgccgggcactgtgatagggaacctcgccaaggacatgtccttgagtctg
tctcatgcctccaagaccaatttcaggatgatgaaacaatttaacgactcgttcatcagg
gtgcgggaaagcgacgggcagctgtctgtcggggagaggatagaccgggagcggatctgc
aggcacactccccagtgcctgatcacttttgacgtggttaatttctccaaagatcgctac
aagctcattcacgtcgaggtggaagtgaaggacatcaatgacaactctccagagtttccg
agcagggagtctgtggtggagatctccgagaacgcagcgctggggtccaggatcccgctg
gacccggcggtggacgcagacgtggggtcgaattacatccagagttatcagatttctgtc
aacagtcattttactatcgatgtgctcctgagagcggatggggttaaatatgcggagctg
gtcctgatgaaggagttagaccgggagactcagtcctcttacaatgtggacctggtcgcc
acagacggggggaacccgcacagatcgggctcaacaaaaataacgatcaaagtgactgac
ttcaacgacaacagtcctgtgtttgacaagaagagtttctccgtgagtttgccagaggac
gcgcctgttggcgccatcatcctggacttaaacgcagtcgatgctgacgagggtctgaac
ggagaagtggtctacgggttcgggaaacaggtctcccacgagatccgagaacttttccaa
gtggatcacaaatcgggccgcctgactctcaggagccccgtggacttcgaggacaaaagc
acctacgagctggacgtgcaggcgacagatctgggagcgaacccgaccccctccgcgtgc
aaaatcattattcacgtcacggacgttaacgacaatgccccggaaatcagcatcaccccg
atgacctcggtcggaacaggtgttgcgcacatcagcgaggcggcggagaaggacagcctg
gtggcgctgatcagcaccctggacagggactcgggcatcaacagccagatccactgcact
ctgtacggccacgaccacttcaaactccgccaggctcacgaggacagctacatgatcgtg
acagcagccgctcttgaccgggagcgcatcagtgaatacaatctgactgtcatggctgag
gattttgggtcccccccactgagaaaaatctcccagttcactattagactcagcgacgag
aacgacaacgccccccactttgctaaaagcgtgtatgaagtttcagtggtggagaacaac
gccccaggcgcttatatcaccacagtggaagccagtgatgcagatctgggcaacaatggg
aaaatcacctacagacttctggacagtgtcatcatggggtccccagtgaacacatttgtg
tcccttaactcggtgtctggctccatatatgcgctgagaagctttaattacgaagtgatg
aaacagctggatgtgcacatccaggccagtgatggcggatcaccacagcttcagagcaca
gccatcatcaggttaaaaatagttgatcagaatgacaaccagccttatatcatcaagccc
ccgctctacaagggctctgcagagattttcctgcccaaagatgctcctgcagggtacgtg
gtcacccagatacgggccacggatgctgatgagggcgtgaatgcacaactgtcctttaaa
atcacagagggtggacacctgggcttctccatcaacaaggacacggggaaggtgctcgtg
agtcgacagctgacatacgacatctcagacaatgtcaaagtgacagtggcagtcagcgac
aatggatccccctctctgacctcctcagccatgatcattttcagcttcatcgaagggact
ctgccgagcttgccctcactggctcaaaatgacaatgaggaggtcttcgagtgggatatg
tccatcgccataattatcgtcttggcagggagctgctccatcctcctgctggccatcatc
ctcatcactaccatttgtagccgccggaaaaaggagaccagagaagcggggtttgataac
aaagtggacatgccggatgtggagaaagtggaaagtggtcagattgattcaatgattgcc
aaccacaaaggcaaaacgtttgatgtccacccatttcctgagggtccgccagtggccggc
accacaacagagactagctgtgaggagagtaggcagacagcaggcatgtttgaatcaaac
agcaggaccatggaggggaaattaaagggttattccactctgccaggatatgggaaggag
actgtgaggcctataacaatatggaagggcaattcattcacaactatctcagcaagagat
cctcaaatcagtggcaaggatagtggaaagggggacagcgactttaacgacagcgactct
gacatcagtggagatgtccacaagaaagagtcaccaccaatgaacagtctctgggcatgt
acgagtgagtgcaaggtgctgggacactctgaccgatgctggagcccctcagctgcaaga
cccaacacgagcctggcctgtggacctcacctatcaacgttctccaaaaccgcaaccctt
cctcgtgacgccaggagagaaaactactacccggctcacctacctaaaactggcggtctg
cagagcgtgtatgaaaaagttcaacaccaggagtttgattacatccttgttggtccacca
acgccagccaggatacaggaaacagatgaaatgtccatcccagagtacacaaactcttag
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