Nematolebias whitei (Rio pearlfish): 119419646
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Entry
119419646 CDS
T08042
Symbol
mid1
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1 isoform X1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
119419646 (mid1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nwh04121
]
119419646 (mid1)
Enzymes [BR:
nwh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119419646 (mid1)
Ubiquitin system [BR:
nwh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
119419646 (mid1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-RING_UBOX
fn3
RING_XB3-XBAT31
PRY
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-C3HC4_3
Ig_DSCAM-DSCAML_C
zf-RING_5
Pur_ac_phosph_N
Inhibitor_Mig-6
Motif
Other DBs
NCBI-GeneID:
119419646
NCBI-ProteinID:
XP_037542931
LinkDB
All DBs
Position
13:complement(23009862..23030820)
Genome browser
AA seq
631 aa
AA seq
DB search
METLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHCTPSEPIQSISAFQCPTCR
YVITLNQRGLEGLKRNVTLQNIIDRYQKASLSGSNSPNETRRERVVPDSKAMTSPSDRVQ
CQFCEQDPPQEAVKTCVTCEVSYCEECLKATHPNKKPFTGHRLIEPLLDSHLRGLMCLEH
EDEKQALDSNLSNLIKRTSELESLMGKLIQTCQNVEVNASRQENKLLEECDLLINIIQQR
KQVIATKIKEGKAMRLRKLAQQIAGCKQCIERSSSLITQADQTLKESDHARFLQTAKSIC
ERVSMATASSQILLPEINLNDAFDTFALDFTREKKMLESLDYLTAPNPPVIREELCTASY
DTITAHWTSDDEFSVVSYELQYAIFTSQSNVVSLCNSVDSWMIVPNIKQNQYTVHGLQSG
TKYIFIAKAINQAGNRSSAPGKLKTNSQPFKLDPKSAHRKLRVSHDNLTVERDETSSKKS
HSQDRFSSHSSYGVTGNVYIDSGRHYWEALIGGSTWFAVGVAYKSAPKHEWVGKNSASWV
LSRCNNSWVVRHNSKEVPIEPSPHLRRLGVLLDYDLGSLSFYDAVGSLHLHTFDISFAQP
VCPVFNVWNRCLTVLSGLPIPDYLEDTDYNH
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggaaacacttgagtctgagctgacctgtccaatctgtctggagcttttcgaggacccg
ctgctgttgccctgcgctcatagcctttgtttcaactgcgcccatcgaatcctggtctcc
cattgcacccccagcgagcctattcagtctatcagcgccttccagtgcccaacctgtcgc
tatgtcatcaccctcaaccagcggggcctagagggactcaaacgcaacgtgaccctgcag
aacatcatcgaccggtaccagaaagcttccctgagtggatctaactctccgaacgagact
cgccgagaacgagtcgtccccgacagcaaagccatgacatctccctctgaccgggtgcag
tgtcagttctgcgagcaggacccgccgcaggaagccgtgaagacctgcgtcacctgcgag
gtgtcgtactgcgaggagtgcctcaaggccacccatccgaacaagaagccattcacgggc
caccgactgatcgagcccttgctggactctcacctgcgagggctcatgtgtctggagcac
gaggatgagaagcaagctttggattccaacctcagtaatctaatcaagaggaccagtgaa
ttggaaagcttgatggggaagcttatccaaacctgccaaaacgtggaggtaaatgcatca
cgacaagaaaacaagctgctggaagagtgtgacctgctgattaatatcatacagcagagg
aaacaagtcatagcgacgaagataaaggaggggaaggccatgaggctgaggaagctagcg
caacaaattgccggctgtaagcagtgcatcgagaggtcctcctccctcatcactcaggcc
gaccaaaccctcaaagagagcgaccacgcccgtttccttcaaacagctaaaagtatctgt
gagagagtgtcgatggccacagcatcatcacaaatactgttaccagaaataaacctaaat
gacgcctttgatacgtttgctttggacttcacgagggagaagaaaatgctagaaagttta
gattacttaacagcaccaaatccaccagtaattcgtgaggaactttgcacggcctcgtat
gacacgatcacagctcactggacatcagatgatgaattttctgttgtatcatatgaactt
cagtacgccatctttaccagccaatctaatgttgtcagcttgtgtaactctgtggatagc
tggatgattgtcccaaacatcaagcagaatcagtacaccgtgcacggactccagagtggc
accaagtacattttcatagcgaaggctataaaccaggctggaaaccgcagcagtgctcca
gggaaactcaagaccaacagtcagccatttaaactggacccaaagtctgctcaccggaag
ctgagagtgtcccatgacaacctcacggtggagagggatgagacatcgtccaagaagagc
cacagtcaggaccgcttctccagtcacagcagctacggcgtcacgggaaatgtctacatt
gacagcggccgccattactgggaggctctgataggaggcagcacatggtttgccgtgggg
gttgcatacaagtcggcaccaaaacacgagtgggtcggcaaaaactcagcctcctgggtg
ctgtcccgctgcaacaactcatgggtggtacggcacaacagtaaggaggtccccatcgag
ccttcaccgcaccttcggcgtctcggagtgctgctggattacgatttgggatctctgtcg
ttctacgacgctgttggctctctgcacttgcacacattcgacatcagcttcgctcagcca
gtctgcccagtgttcaacgtgtggaacagatgtttgacagtcctcagtggactgcccatc
ccagattacttggaggatacagactacaaccactga
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