Nematolebias whitei (Rio pearlfish): 119420362
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Entry
119420362 CDS
T08042
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119420362 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nwh03021
]
119420362 (pcf11)
03019 Messenger RNA biogenesis [BR:
nwh03019
]
119420362 (pcf11)
Transcription machinery [BR:
nwh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119420362 (pcf11)
Messenger RNA biogenesis [BR:
nwh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
119420362 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
119420362
NCBI-ProteinID:
XP_037543672
LinkDB
All DBs
Position
14:complement(1613358..1629366)
Genome browser
AA seq
1539 aa
AA seq
DB search
MDCLLISGYGINPAGVGFPGSLSSKMDDAAAREDACREYQSSLEDLTFNSKPHINMLTIL
AEENTQFAKDIVAIIEAQISKAPAIEKLPVLYLVDSIVKNVGGEYLAVFAKNLIASFICV
FEKVDENTRKSLFKLRSTWDEVFPLKKLYALDVRVNALDPAWPIKPLPPPTTAIHVNPRF
LKQAEEPPSPQAAQLPAPVRAPSPTPGASQSSLTQEQLIRQQLLAKQKQLLELQQKKIEL
ELEQTKAQLMGQAGFALPPPSTVSSPAASSSLSKPVNQTAPVIRPWIPPPPQTEPKPSTR
DPRLNRTGPLAAKKESPLVTPDRKPLDKSTRQDKTRPPRKEVLEDKSKSPSLLNRSVQKP
RPVEAEPQRPAEDAKKDPRLKKRLQDKTSETREDEVKDKKRCSDKERDEAPRGPEPPRTA
KSRLVNGSVAKQDRGDSADKADFKTGGNARTHARKRSRSRSPTASPKRKDRRSPKGRPRS
SSPSHKPGKPRRVRVDDVQHGKLGRDRLALKKTQSEGRRPKRPAEDRRSESRDSPRGHDG
GVKEPKEVPQRWRSGWEENKHLKLLEDARAKTGPLRHKLYGTPTRPGTPRTPKHRLSVDP
DLQIPEVLNSASKKDLLRRASKRLESGEISQEDFLNMAHQIKHLFQYQEEKQRSEAWDGA
QNQCPSAQPRSHDAMDAAELSYYEHKSKLRKTQVSRRVPAEDTQNTSEDAGDKSLSAEHP
YIHLPRDRPGERRSKELEEPRAPLAPMIEEYNHGKEFPTLKSLPGLRFRRRADPRESRDT
GEREWTSPLMERQPYDEEQKSGYDAPRRYGPPAEPRRPEGPLPSSTGSLRNCPSPGGLEA
PPLRFERERLSPLHQKDVADMSPVPRFESPNSEHSDDAPLEVPHPPSKSILKGPPRGGPL
SAVRPLEESPGHTPPHEGGQPPTRYSGPGHMGPSRPHRPGWYEGPGRYEESPFEGPHHAA
LRFDAGGPPHHNVPDRTEGPGPSDGPHMGHGPMRGDGIGRFDGPPQGPVRFGAPIGQQPP
IRFEGQAGGSGHLEGPGQHFEGPVRFSNMGPGPMGFQQPRPPHFDGPTNQMGPMRFDGPG
PTRFEGPAQLGPRFDVPGPLQGGPPHFDYPTGQQGPPRFAPQPNLPPMQPMAPPIYDTPM
APQQNFGMGPQHFQEPLNPQFPGGPNLQPAGSFNLQPVQFSQPGPGAFYNPAAPAGGLQQ
PVNLMGNLNQPFLPQNPEPFGLQTHPVPPPENHFGQVDVNDLLSKLLSTGIIKSSSQPDT
APTSTAESSSAAAQAPPVEEEEEEEPEVEEEDFPDLTSFSIEVMKQRYESVVTKLYSGNQ
CCLCSMRFTTAQTDMYADHLDWHFRQNHAGKVASKKVTHRRWYYSLTDWIEFEEIADLEE
RAKSQFFEKENEEEVQKNQAAAKEKEFQSVRATKDQVGESCEICQEAFETYWVEEEEDWF
LKDAIRVDEKNFHPACFEDYKNTSSYLDVTPSPSKLLTEHPLGAYIKTEDEEVTSCDCDV
VKQEVKSEAPEVPQEEEQEEEARGQEEVQADSAQLEDEA
NT seq
4620 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctgctgataagtggttatggtattaatccggccggagtaggttttcccggg
tcgttgagctcgaagatggacgacgcggcggcgagggaagacgcctgtagagagtaccag
tcctcgctggaagacctgacgttcaacagcaagccccacatcaacatgctcaccatcctg
gcagaagaaaacacccagttcgccaaggatatcgtggcaattatcgaagcgcaaataagc
aaggccccggccatcgagaagctgcctgttttgtacttagtggactccatagtgaagaac
gttggaggagagtacctcgcagtgtttgctaaaaacctaatcgcttcatttatttgtgtc
tttgaaaaggtggacgagaacaccaggaagagcctgttcaagctgcgctccacgtgggac
gaggtcttccccctcaagaagctgtacgcgctggacgtccgggtcaacgctctggacccg
gcctggcccatcaagccgctgccgccgcccaccactgccatccacgtcaaccccaggttc
ctgaagcaggctgaggagccgccctctccgcaggcggcccagcttccggcgccggtgcgt
gccccctcaccgacccccggcgccagccagtccagcctgacccaggagcagctgatccgg
cagcagctgctggccaagcagaagcagcttctggagctccagcagaagaagatcgagctg
gagctggagcagaccaaagcccaactgatgggacaggctgggtttgcattaccaccaccg
tctacggtctctagtcctgcagcgtccagctccctgtccaagcccgtcaaccagaccgct
cctgtgatccggccctggatcccccccccgccccagactgaaccaaaaccttccactaga
gacccccgtctgaaccgcaccggtcccctagctgcaaaaaaagagagtcctctggtcact
cctgaccggaaacctttggacaaatccacccggcaggacaaaacccggccccccaggaaa
gaagtgttagaggacaagtccaagtctccgtctctgctgaacagaagtgtccaaaaaccc
agaccggtggaggcggaacctcagagacccgccgaggacgccaagaaggaccccaggctg
aagaaacggctgcaggacaaaacgtcggagaccagagaggacgaggtgaaggacaaaaag
cgctgcagcgacaaggagcgggacgaggccccgcggggaccagaacccccgaggaccgcc
aagtccagactggtgaacggctccgtggccaaacaggaccgaggcgactccgcagacaag
gccgacttcaaaaccggaggaaacgcccgaacccacgccaggaaacggtctcgctcgcgc
tcccccaccgcctcccccaagaggaaggacaggcgctcgcccaagggccggccccgaagc
agctccccgtcccacaaacccgggaagcccaggagggtccgagtcgatgacgtgcaacac
ggcaaactgggtcgagaccgactcgccctcaaaaagactcagtcagaaggcaggaggccg
aagaggccagcagaggaccgccgctccgagtccagagactccccccgaggacacgacggg
ggggtcaaggagcccaaggaggtgcctcagcgctggaggagcggctgggaggagaacaaa
cacctgaagctcctggaggacgctcgcgccaagaccggtcctctgagacacaaactgtac
ggcactccgacccgtcccggcacccccaggaccccaaagcatcgtctcagcgtggaccct
gacctgcagattcctgaagtcctcaactccgcctccaagaaggacctgctcaggagggct
agcaagcgtctggagagcggcgagatctcccaggaggacttcctgaacatggcccaccag
atcaaacacctgttccagtaccaggaggagaagcagcgctccgaggcctgggacggcgcc
cagaaccagtgtccctcggctcagccccgctcccacgacgccatggacgctgcggagctg
tcctactacgagcacaagtccaagctgaggaagacgcaggtcagccgccgggtccctgcc
gaggacacgcagaacacgtcggaggacgccggggacaaaagcctgagcgctgaacatccg
tacatccacctgccgcgggacagaccaggtgagaggcggagcaaagagctggaggagccg
cgggcccctctggcccccatgatcgaggagtacaaccacggcaaagagttccccacgctc
aagtctctgccgggactccgcttcagacggagagccgacccccgcgagtccagagacacc
ggtgaacgggagtggacgtcgccactgatggagcgccagccgtacgacgaggagcagaag
agcggctacgatgctccgcggagatacggcccccccgctgagcctcgcagacccgagggg
ccccttccctccagcaccggaagcctcaggaactgtcccagcccaggtggtctggaggcc
ccgcctcttcgttttgagcgggagcgcctatcaccgctgcatcagaaggacgtggcggac
atgagtccggtcccacgcttcgagagtccgaacagtgaacactcagatgatgcgcccctt
gaagtcccccatcctccctccaagtccatcctgaagggcccacctcgtggggggcccctg
tctgctgtccgtccactggaagagtccccaggacataccccacctcatgaaggaggacaa
cccccaacacgctacagtggacccggacacatgggcccctccaggccccacagacccggc
tggtatgaaggccctggacgctacgaggagtctccgtttgaggggccacatcacgcagcg
ctcaggtttgatgctgggggcccacctcatcacaatgtacccgacagaactgaaggccct
ggacccagcgacgggccccatatgggtcacggcccaatgagaggagatggcattggacgg
ttcgatgggccccctcaggggcccgtcaggtttggggctcccattggccagcaacccccc
atcaggtttgagggacaggcaggtgggtcaggccacctagagggcccgggtcagcacttc
gaagggccagttcggttcagcaacatgggccccggtccgatgggtttccagcagccgcgg
cccccgcactttgacgggcccactaatcagatgggtccgatgaggtttgatggtcctggt
cccactcgcttcgagggccctgcccagctgggtcccagatttgatgtgcctgggcccctt
cagggtgggcccccacactttgattaccccactggccagcaggggcccccgaggttcgcc
ccccaacccaacctgccccccatgcagccaatggctccccccatctacgacactcccatg
gctccccagcagaactttggcatgggcccccaacatttccaagaacccctgaacccccag
ttccctggggggcccaacctacagccggcagggtccttcaacctgcagccggtccagttc
agccagccgggccccggggccttctacaaccctgctgcccccgctgggggcctgcagcag
ccagtgaacctgatgggtaacctgaaccagcccttccttccacaaaaccccgagcctttt
ggactgcagactcatccggtccctcctccagagaaccacttcggtcaggtggacgtcaac
gacttgttgtccaaactcctctccactgggatcataaagtcgtcctctcagccggacacg
gcgccgacgtccaccgctgagtcgtcttctgcggccgctcaggctccgcccgtggaggag
gaagaggaggaggagccggaggtagaagaggaggacttcccagatctgaccagcttcagc
atcgaagtcatgaagcagcgctatgagagcgtggtgaccaagttgtactcaggaaaccag
tgctgcctgtgcagcatgcgcttcaccaccgcgcagaccgacatgtacgccgaccacctg
gactggcacttcaggcagaaccatgccggcaaggtggcgagcaagaaggtgacgcatcgc
cgctggtactacagcctgacggactggatcgagttcgaggaaatcgccgacctggaggag
cgggccaagagtcagttcttcgagaaggaaaacgaggaggaggtgcagaagaaccaggcc
gctgccaaggagaaggagttccagagcgtccgagccaccaaggaccaagtgggagagtcg
tgtgaaatctgccaggaggcctttgagacgtactgggtggaggaggaggaagactggttc
ctgaaggacgccatcagggtcgacgagaagaacttccaccccgcctgctttgaagattat
aaaaacacgtcttcgtatctggacgtcaccccgtcccccagcaagctgctgaccgaacac
ccgctgggcgcctacatcaagaccgaggatgaggaggtcacttcctgtgactgcgacgtg
gtcaaacaggaagtgaagagcgaggcgccagaagtgcctcaggaggaggagcaggaggag
gaggcccggggtcaggaggaggttcaggcagactcggcccagttggaggacgaggcgtga
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integrated database retrieval system
