Nematolebias whitei (Rio pearlfish): 119420405
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Entry
119420405 CDS
T08042
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
119420405 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nwh03400
]
119420405 (lig3)
Enzymes [BR:
nwh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119420405 (lig3)
DNA repair and recombination proteins [BR:
nwh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
119420405 (lig3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
zf-PARP
LIG3_BRCT
DNA_ligase_A_C
RNA_ligase
BRCT_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
119420405
NCBI-ProteinID:
XP_037543722
LinkDB
All DBs
Position
14:complement(5893618..5919124)
Genome browser
AA seq
1006 aa
AA seq
DB search
MHRRLILFVHKAVCVHQHKFGSLVGHQQLTKLCKASPVSLYTNQLPSPPHSLKPSWQTSH
FTSVSHKQDLLQRFPPWSFLYRHFSNQLDMSEQRFLVEYAKRGTAGCKKCKDKIQKGIVR
IGKVVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDLTELEGWEELQDEDKELIN
KHVSDLMAKVNTSPKKKVQAKLNTTGQLMAPPADPSVNVPRKFSGFTAAKAGSSSSPGPS
STPTKGSPLSKQLCDPQHKDCLFREFRKLCATVADNNSYNTKTQIIERFLKKGTGGDKFH
GDLYLTVKLLLPGVVKSVYNLNDKQIVKLFSRIFRCNQDDMVRDLEQGDVSETVRMFFDD
SKSFPPAAKSLLTIQEVDSSLTRLAQLTKEDEQQNELEAISKKCTSNDLKCIIRLIKHDL
KMNAGAKHVLDAVDPNAYDAFKASRNLSDVIERVLRNQQEASNGSGPRKLLTVEASLMTP
VQPMLAEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKSGNTFSYFSRSLKPVLPHKVAH
FKEYIPQAFPGGHSMILDAEVLLIDTNTSKPLPFGTLGVHKKAAFQDANVCLFVFDCIYF
NGVSLMERPLSERRKFLDDNMVEVPNRILFSEMKFVTRAADLADMITRVIREGLEGLVLK
DRKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPDT
KKWCTVTKCSGGYDDAMLARLQKELDVIKISKDPSKIPGWLKIIKNYYPDFIIRHPEQAP
VWEITGAEFSKSEMHTADGISIRFPRMTRIRDDKDWKTATNLHQLKELYRISKEHCDFKV
TAGPSASNDKGSSGGDSGGSSPSSSRKTPAKKTSNSTPSKPKAVKSEPRTPSSEAPSAKK
VKKSEGSVHSNGQTKPKATSQLMEPRNDQTLLDIFSGVKLFLPVSMQDFDRLRRYFLAYD
GDLVQDYDAASATHTLAEPEDDGKAQKVSSNWIWECIRKRRLVPAC
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atgcacagacggttgatcttatttgttcataaggcggtttgtgtgcatcaacacaagttt
ggttcacttgttggacatcagcaactcaccaaactgtgcaaagcctcccctgtctctttg
tacactaatcagcttccctctcctcctcactcgttaaagccttcatggcaaactagtcat
tttacctcagtatcccataaacaagacctccttcaaaggtttcctccctggtctttcctg
taccgtcatttttctaaccagctggatatgtcggagcagaggttcctcgtggaatacgcc
aaacgcggcaccgcagggtgtaagaaatgcaaggacaaaatccagaagggaatagtgcgc
atagggaaggttgtgccgaaccctttcagcgagtctgcaggggagatgaaggagtggtat
catgtgaagtgcatatttgagaagctggaaagggcaagagccaccacgaagaagattgaa
gacctcacagaactggagggctgggaagagctgcaggacgaggacaaagagctcattaat
aaacacgtttcagacctcatggccaaagtcaacacgagtccaaaaaagaaggttcaggcc
aagttgaacaccacgggtcagctgatggctcctcctgctgacccgtctgtcaacgtgccg
cgcaagttctcaggcttcacagctgcgaaggccggcagctccagcagccctggaccgtcc
tcgacccccaccaaaggcagccccctctccaagcagctctgtgacccccagcacaaggac
tgcctcttcagagagtttcgtaagctctgcgccacggtggccgacaacaacagctacaac
accaagacgcagatcatcgagaggttcctgaagaaaggcaccggaggagataagttccac
ggagatctttacttgaccgtaaaattgctcctgccaggcgttgtaaaaagtgtttataac
ctcaacgacaagcagatcgtcaaactcttcagccgcattttccgatgcaaccaggacgac
atggtgcgagatctggagcagggcgacgtgtccgagacggtgaggatgttctttgacgac
agcaagtcttttcctcctgctgccaagagcctccttacgatccaggaagtagactcgtcc
ttgacccgcctcgctcagctgacgaaggaggatgagcagcagaacgagctggaggcgatt
tccaaaaaatgtaccagcaatgacttgaaatgcatcatcaggctaatcaagcacgacttg
aagatgaacgccggggcgaaacacgttttggatgctgtggatccaaacgcctacgatgcg
ttcaaggcctcccgtaacctgagtgacgtgatcgagagggtactgaggaaccagcaggag
gcgtctaacggttctggacccaggaagctcctcacggtggaggcctccctcatgaccccc
gtccagccgatgttggccgaggcgtgtaaatccatcgagtacgccatgaagaaatgcccc
aacgggatgtactcggagataaagtatgacggcgagcgcgtgcaggtccacaagagcgga
aacacgttcagctacttcagccgcagcctcaagccggttctgcctcacaaagtggctcat
ttcaaagagtacatccctcaggcctttcctggtggccacagtatgattctggatgctgag
gtccttctgatcgacaccaacaccagcaaaccgctgccgtttgggaccctgggtgtccac
aagaaagcagcctttcaagatgccaacgtgtgtctttttgtgttcgactgcatctacttc
aacggcgtgagtctgatggaaaggcctctgagtgaacgaagaaagttcctggatgacaac
atggtggaagttcccaacaggatcctgttctcagaaatgaaatttgtcacgagggcagca
gatctggcggacatgataactcgtgtcatcagagaaggacttgaaggcctggtgctgaaa
gacagaaagggcacctacgagccggggaaacgccactggctgaaagtaaagaaggattat
ttaaacgaaggggcgatggcggacacagctgacctggtggtgctgggagcgttctacggg
aaaggctcaaacggaggcatcatgtccagtttcctcatgggctgctacgacccagacacc
aagaagtggtgcacagtcaccaagtgctccggaggctacgatgacgccatgttggcccgg
ctccagaaggagctggacgtgatcaaaatcagcaaggacccaagcaaaatccccggctgg
ctgaaaatcatcaagaactattatccagactttattatccgccacccagagcaagcgccc
gtctgggagatcaccggcgcagagttttccaaatccgagatgcacaccgccgacggcatc
tccatccggtttccccgcatgacacgaatccgtgatgacaaggactggaagaccgccacc
aacctgcaccagctcaaggagctctaccgcatatctaaggagcactgcgactttaaagtg
accgccggtccttcggcgtccaacgacaaggggtcatcggggggagacagcggaggaagc
tcgccttcgtccagcaggaagacgccagccaagaagacgagtaacagcacgccgtccaaa
ccaaaggcggtgaaatcagagcctcgcactcccagctcagaggcgccgagcgcgaagaag
gtgaagaagagtgaaggaagcgttcacagcaacgggcaaaccaaaccaaaggcaacttct
caactgatggaaccaagaaatgaccagacgctgctggacatcttcagcggagtgaagctc
ttcctgcccgtctccatgcaggactttgacagactgaggaggtacttcctggcttatgac
ggagacctggtgcaggattacgacgctgcatcagccacacacaccctggctgaacctgag
gacgacggcaaggcccagaaagtctcgtccaactggatctgggagtgcattcgcaagaga
cgccttgtgccagcctgttga
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