Nematolebias whitei (Rio pearlfish): 119420804
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Entry
119420804 CDS
T08042
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
119420804 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nwh04131
]
119420804 (vps8)
Membrane trafficking [BR:
nwh04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
119420804 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_Vps41
Clathrin
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_1st
TPR_VPS8_2
zf-RING_Vps41
zf_RING_Vps8_fungal
zf-RING_11
zf-RING_UBOX
zf-RING_2
Beta-prop_EML_2
Beta-prop_WDR5
WDR55
Beta-prop_WDR3_1st
Beta-prop_THOC3
zf-RING_5
zf-rbx1
Beta-prop_HPS5
EIF3I
Motif
Other DBs
NCBI-GeneID:
119420804
NCBI-ProteinID:
XP_037544162
LinkDB
All DBs
Position
1:88779880..88859544
Genome browser
AA seq
1400 aa
AA seq
DB search
MSQSPDTGSLLSASSQLNLMEVDSIDDKEFDIPQVDTPPTLESILSQVEEEEDPFVLEDT
CILNTDNMDAQSCDTSSLASSDSGDPAHLKRKRKPIDPNTTVHGSVLRLSLLKGISAQIV
AAADKVDAGLPTAITMSGVIAVGTSHGLALIFDTNQALRLCLGNKSTGAEFGAISALSIN
HDCSRLLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHVKFTDDPTLAVCNDSGGSV
FELTFRRVMGMRSCDSRCLFSGSKGEVCCVEPLRAPPDFRDHPITCYSLLAMASLTKILV
IGLKPTLNVWMTFPYSKSDPSSVPQLAWQFVPVQKTYNPILAFCKGDTVHFLLVKKEEVG
TIHVIKQRQLHLSCDIISLNWINSSTLVLVDSHEKLQVVDRSSQVVLETLDLEQVQLVYN
SRHFKSLATGGNVSQALALVGEKACYQSLSSYAGQIICLGTKSAHVLSLRNWKERIDCLL
KLEDFVEALTLAWSFHEGTAKAVVGLHGDSQKRKAAVSDKMVEILLQFAECALKKCPEHG
KIQVMEQHFQDVVPVLVDYCLLLQKADLLFNQLYPRMVENMIAKGVFLESLESYIVTNRL
GHLTTPIMKDLLAHYHDSGMMDSLERCIVHLDVTNLDIQQVVQVCWNNQLYDAVIYIFNR
GMNDYITPMEKLFSVIGPRVKEGRSLTDEDVVMGNKLLVYISCCLAGRAYPLGDIPEDLV
VQVKNQVFEFLVRLHSGNASHEEVFPFIQTLLHFDTREFLNVLAMTFEDFQNDKQALEYQ
QRIVDILLQVMVDNPDFTPSQVGGLFTFLARQLAKPNNTLFVNRNLFDQVLEFLCCPDDD
SRHTERQQVLLELLQVGGAVQFNEERLFTLAEKANFYQICEFLYEKKHMYDRIIDCYLRD
PLRKLEVFSYIHNLMSLPGYTSEEKQQVKSKVLQHTQDLVSLDPSKQADLMVWHFADELR
SIISELKDDQLLFRFLSCLLEPREGSHSGSTLLLDSELHELLLDLMCQYAPEQLLVFLQT
SQHYRLEEAIQITKKYHCNEATAYLLEKKGDIHGAFDDLLQTLKERLSAIADESEGGGAE
RLNEEETDSDVKLTRVNDSLNNIISLCHRNCQKLDQEQRKDLWFPLLDTMMASQREVMGL
SFKHTSEKLKEMTLKVLNCMSSFISIPAIIQQILQDPVYGKGKLAEIQGLILGMLDTFTY
EQTLLETTTSLLNHDLHWSLAHLRSAVTRGLHPRQEYCTICLQHYKRRQDPAEEIIVFSC
GHPYHLQCLQQKDCGRGAASEAQQQWRCHKCSSSHRGRGPSAKASRSRNASLAQTRVASG
LDKGAEPNKKKVFASTTLDVQQELSWDQLRNLYRGPSRLSILSEVSSGQSSEKMGFLIPA
QPGPAESLLLKLSPPPLIEE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagtctccggacactggaagccttttatcagcttcttctcagctcaacctgatg
gaagtggactcgattgatgataaggagtttgacattccccaagtggatacacctcccaca
ctggagagcatccttagtcaggtggaggaggaggaagatccatttgttctggaggacaca
tgcatactaaacacagacaacatggatgctcagtcctgtgacacgtcttctctagccagc
tctgacagtggagatcctgcgcacctgaaacgaaagaggaagccaatcgatccgaatacc
acagttcatgggtcggtacttcgactcagcttactgaagggcatctctgcacagattgtt
gctgctgctgacaaagtggatgctgggctaccaacagcaataaccatgtctggtgtgatt
gctgtgggaacttctcacggtcttgccctgatttttgatacaaaccaggctctgcgactt
tgtctgggcaataaatcaacgggtgcagagttcggtgctatctctgctcttagcatcaac
cacgactgctcacgtcttctctgtggttttgctaaaggacagattacaatgtgggatctt
gctaatggaaagcttctgaggactatcactgatgcccatcctccaggaacagctatacta
catgtaaagttcacagatgacccaacgttggcagtgtgcaacgacagtggaggatctgtg
tttgaactgactttcaggagggtaatggggatgcgctcttgtgactctcgatgcctcttc
agtggttctaaaggagaggtgtgctgtgttgaacctttacgggctcctccagatttcaga
gatcatcccataacatgctactctctgctggctatggcctccctcacaaagattttggtc
attggactcaagcccacgttgaatgtctggatgacttttccttactccaagtctgatcca
tccagtgttcctcagctggcctggcagtttgttcctgttcagaagacctacaacccgatt
cttgccttttgtaaaggagacacggtccacttcctgctggtaaaaaaggaggaggtgggc
accatccatgttatcaagcaaagacaacttcacctcagctgtgacatcatcagcctaaat
tggatcaacagttctactctggttctggtggacagccatgagaagctgcaagtggtggac
cggtcctcccaggtagttctggagactctggacttggagcaggtgcagctggtctataac
agcagacatttcaaatcactggccactggagggaacgtctcccaggctctggcattagtt
ggagaaaaggcctgttatcagtcactttccagttatgctggtcagattatctgtttgggc
accaagtcggctcacgtcttgtcactaaggaactggaaggagcgcattgactgtttgctg
aaactggaggattttgttgaagctctcactctggcctggtcgtttcatgagggaactgct
aaggctgtggttggtcttcatggagattcacagaaaaggaaagctgctgtcagtgacaag
atggtggagattcttcttcagtttgcagagtgcgctttaaaaaagtgtccagaacacggc
aagatccaagtaatggagcagcatttccaggatgtggttccagtactggtggattattgc
ctgctgctgcaaaaggctgacctgctgttcaaccaactgtatccacggatggtagagaac
atgattgctaagggtgtttttctggagtccctggagtcgtatattgtcaccaaccgcctt
ggtcacctaaccacacccattatgaaggacctcctcgcccattaccatgatagtgggatg
atggacagcttagagagatgcattgtccatttagatgttaccaacctggacatacaacag
gtggttcaagtatgttggaacaatcagctgtatgatgcagtgatctacatcttcaacaga
ggcatgaatgattacattacaccaatggagaaactcttttcagtgattggcccaagggtt
aaggaagggaggagcctaacagatgaggatgtggtgatggggaacaaacttctggtttat
ataagctgctgtcttgctggtcgggcatatccactaggagacatccctgaagatcttgtt
gttcaagtcaagaatcaggtgtttgagttcctggttcgtctccattcaggcaatgcctca
catgaagaagttttcccatttattcaaacactccttcattttgacacacgtgaatttctc
aatgtacttgccatgacatttgaagacttccagaatgacaagcaggctcttgagtaccag
cagagaatagtagacatcttacttcaggtaatggtggacaacccagacttcactccatcc
caagtgggtggtctctttacttttctggcccgccaactggccaagccaaacaacacactc
tttgtgaacaggaacctttttgatcaggtgctagagttcctgtgttgcccagatgatgat
tctcggcacactgaaaggcaacaggttctgctggagctgctgcaggttggaggtgcggtc
cagtttaatgaagaaaggctctttacattggcagaaaaggccaacttctaccaaatctgt
gaatttctttatgagaagaaacatatgtatgacaggattatcgactgctatttaagagac
ccccttcgaaagttggaagtcttcagctacatacacaatctaatgtccctgcccggctac
acctctgaggaaaaacaacaagtgaagagcaaagttcttcaacatacacaggatcttgtg
agcctcgaccccagcaaacaagctgacctcatggtgtggcactttgcagatgagctgcgg
tcaatcatctctgagctcaaggatgaccaactgcttttcagattcctcagctgtcttttg
gagccacgagaaggatctcattcagggtccaccttgcttttggactctgaactccatgaa
cttctgctcgacttgatgtgccaatatgctcccgaacaactcctggtctttctccagacc
tcccaacactacagactagaggaagccatacaaattacaaagaaataccactgtaatgag
gctacagcctacctgctggagaagaagggagatattcatggagcatttgatgacttgctg
cagaccctgaaagaaaggctgtctgccatcgctgatgagagtgaaggaggaggagcagaa
agactgaacgaagaggaaacagatagtgatgtaaagctgacgagagtcaatgattcactg
aataacatcatttctttatgtcatcgaaactgtcagaaacttgaccaggaacagagaaaa
gatctgtggtttcctcttctggacaccatgatggcttctcagagagaagttatggggctc
agttttaaacacacctctgaaaagctgaaggagatgactctgaaggttctcaactgtatg
agcagctttatttctattcctgccattattcaacaaatactgcaggatccagtttacggg
aaagggaagctggcagagattcaaggcctcattctgggaatgctggacacttttacctat
gagcagacattactggaaaccacaaccagtctgctgaaccatgacctccactggtccttg
gctcatctccgctcggctgtcaccagggggctccacccacgacaagaatactgcaccatc
tgcctgcagcactacaagaggaggcaggacccagctgaggagatcattgtgttcagctgt
ggccacccgtatcacctgcagtgcctgcagcagaaggactgtgggaggggtgctgcttct
gaggcgcagcagcagtggagatgtcataaatgttcctccagtcatagaggaagaggccct
tctgctaaagccagcaggagccgcaacgcatctctggctcagactcgtgttgcatcagga
cttgacaaaggggctgagcctaacaagaaaaaggtgtttgcttcaacaacgttggacgtc
cagcaggagctctcgtgggatcagttacgaaatttataccgaggaccatccaggttgtcc
atcctttcagaggtgtccagcggtcaaagcagtgaaaagatggggtttctaattccagcc
caaccaggacctgcagagagtttactccttaaactctctcccccaccacttattgaagaa
tga
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integrated database retrieval system
