Nematolebias whitei (Rio pearlfish): 119421114
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Entry
119421114 CDS
T08042
Symbol
rbbp6
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RBBP6
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nwh04121
]
119421114 (rbbp6)
Enzymes [BR:
nwh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119421114 (rbbp6)
Ubiquitin system [BR:
nwh04121
]
Ubiquitin ligases (E3)
U-box type E3
119421114 (rbbp6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-C3HC4_2
zf-CCHC_2
U-box
zf-C3HC4_3
zf-CCHC
zf-RING_5
zf-RING_2
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
119421114
NCBI-ProteinID:
XP_037544437
LinkDB
All DBs
Position
15:24487084..24600653
Genome browser
AA seq
1654 aa
AA seq
DB search
MTHIHYKFSSKLSYDTVVFDGPHTTLSDLKRQIMSREKLKAGDCDLQITNAQTKEEYTDD
EGLIPKGSSVIVRRLPTAGGKSSSSSKTNKTERSDFHFPHVFGVSRAMSEQSSTKALSFF
SKMQMANLVDADVSEEDKIRVMINQSSLNLNTKFATTLSENYTCYRCGNTGHHIRNCPTS
GDKNFEGPPKIKKSTGIPRSFMVEVDDPNIKGVMLTNSGRYAIPAIDAEAYAVGKKEKPP
FVPQAVPKPEVEEEPIPDELLCLICHDLLGDAVVIPCCGNSYCDECIRTALLDSEDHVCP
TCGQSDVSPDTLIANKFLRQTVNNFKKEQGVAKRVGKSSVASTSKTLSPAPTPAPTPPTP
APTPAPVSVQIQLSKPLQPPCGQKDSLQSPSKGAEPTTVSEGPDVPPEATQPASAENSSN
SSPQLVESQALISNNEDEEKMDDSTAVAPVLSVSDKDPSEAPKQLEPQVRACTHXNQTHT
IHSVCNSLTVVSVQVNGTEETEQLQTVSVNQSVLSSDSSLELTSSSNSQERFVCLSACPS
SSAPPPGGLTEPSTEQHPTTTSSSSSSSFSTTPSPLFASPPPHAFVPSHQPHSSYSPGYQ
QTTPTWKLPTPQGAPIPSLCSSTCTPSIPVLIPKEWHRSQREKTESSPHRHSSSHPKFSK
SKSSRSYSRSHSRSASRSRSRSRPCSPVSGPRNFHSSSTPSCSYGYKRPSSHTSSSSPRG
GRSQSKSSSHRDESRHHSRRSSSSSRSSKRRREAGDLSYAADASSLELERQSYLQWREAY
QEWYDNFYSNFIKQFHQLPPPPPPPCPQDSFCPLQSRRTASPSSSEASSYGRSPHSQSSS
DARSVASDPSVDSCLSDKANDRLPSRHSTPTEDPTQTRETSENCTETSRSGTVTKRSGEA
NSQAIKSNTNQQTVKNADKSSHSNHEQQKKKRERERTSASLGSKRDLRQDKRCNTEPKAS
DEGHPGPHKATQSVHKPLKTDKPLDKECKRKDKEESHLKNKQRSRRSQDSESRQDKLRKD
KLNPSKGPDTTASEREWQPGDGEGSGSRPEVNRKRRWEDKSKNERESNLSVVSKSRKCPI
TEPAEPPSCDSKCLKLSDRKKPKPDKKSESLAQTNIWEGGMKVIPQKKISININLDGKRL
DEKTGQINLFNSEIQTQTRVQTGVTDGTHTEASKKEESSPANLAKETAVQHEISSKATIR
DDKQEKAEEKREAENKETEDLDLWHCALTCVEDESLTGTEAAQDDCRDKVASSQKEGSAR
RESRGEARREEEMTAKHRRKPTNLHGGQHSTSKEDSTSVRSSCGAGGGQKKKTGVRTQEE
SSQEAEVTQNPPGQVSRCRWENSGKKQSQMEILNSAALPQPSVTVSGCETTQSSEQRQRS
TERRRDGDRGTRGRDQEKETHSALSNLGVDPSGGAKRDEETRPSDRERTRESENQKERKR
LKQGGREDEWRRDEPSVQKRYQPSSSSVLHSTERRERLQGGSIMSWKPLSSRCMYSSDQY
CFKTNMGKKNSYYSHHHHQPPSNYREKSRPEHSPPSPYYNHCEDQDLLLFEPIENFQKGF
PGGGSMPNRSRNESKAHRGEQRSEKTPRGGRETPEFGDGSGGGGRQKEEKARKLEERRRS
SSDSVRSSSSHMNDREDRRDRGREKRTKLQEVTA
NT seq
4965 nt
NT seq
+upstream
nt +downstream
nt
atgactcatattcattataaattctcgtccaaactaagctacgacacggtggtgttcgac
ggcccgcacaccacgctcagtgacctgaagaggcagattatgagcagggagaagctcaaa
gctggagactgcgacctgcagatcacaaacgcacaaaccaaagaagagtacacggacgac
gaaggcctgatccccaaaggctcctctgtcatcgttaggagactccccaccgctggaggc
aagtccagctcgagtagcaagaccaacaagactgagcggtcagatttccactttcctcac
gtcttcggagtcagcagagcaatgagtgagcagagttcgaccaaagccttgtcatttttc
tccaagatgcagatggctaacttggttgacgcagatgtgtctgaggaggataagatcaga
gtgatgattaatcagtcttctctgaacttgaacacaaagtttgccactaccctgtcagag
aactacacctgctatcgctgtggaaatactggacaccacatcaggaactgtccaacctct
ggggacaaaaactttgagggtcctccgaagatcaagaagagcacaggaattcctcgctcc
ttcatggttgaagtggacgatcccaacattaaaggagtcatgttgaccaactctggacgt
tacgcgattcctgctatagacgcggaggcgtatgctgttgggaagaaggagaaacctcct
tttgtcccacaagcggtgcctaaacctgaagttgaggaggagcccatccccgatgaactc
ctctgcctgatctgtcacgacctgctgggcgacgccgtggtcataccctgctgtggaaac
agctactgtgacgaatgtatccgcacagccttgttggattctgaggaccatgtctgcccc
acgtgtggccaatcagacgtctccccagatactctgatagccaataaatttcttagacag
actgttaacaactttaaaaaagaacaaggcgtcgccaaacgtgtggggaaaagcagtgtc
gcctccacttccaagactttaagtccagcaccgactcctgcccccactcctccgactcct
gcccccactcctgcccctgtcagtgtgcagatccagctcagcaagcctctccagcccccc
tgcggccagaaggactctcttcagagtccttcaaagggtgcagaaccgacaacagtatct
gaaggcccagatgttccccctgaagcaactcaacctgcctctgctgagaactcgtccaac
tcgtctccacagctcgttgaaagccaagcattaatatccaacaatgaggatgaagaaaaa
atggacgactccactgctgtggctccagttctgtcagtttccgacaaagatcccagtgaa
gctccaaagcagctggaaccacaggtaagagcatgcacacactaaaaccagacccacacc
attcacagtgtgtgtaattcattgacggtcgtgtctgttcaggtgaacggcactgaagag
accgagcagcttcagacagtctctgtgaatcagagtgtcttgtcctcggattcctcttta
gaactgacttcgtcctcaaactcccaggagaggttcgtctgcctcagtgcctgcccctcc
tcctctgcacctccccctggaggcttgactgaacctagcactgagcagcatccaaccacc
acgtcctcctcatcttcctcttcattctcaaccacaccgtcgcctctctttgcctccccc
cctcctcacgctttcgtcccatctcaccagcctcacagcagttactctcctggataccaa
caaaccacgcccacctggaagcttccaaccccccagggtgcccccatcccatccctctgc
tcctccacctgcacaccctcaatccctgtcctaattcccaaggagtggcacagatctcag
agagagaaaacagaaagctcacctcacaggcactcctcttcacatccaaagttctccaaa
tccaagtcttcccgctcctactctcgatcacacagtcgctctgcttctcgctcccgctcc
agatcgaggccgtgctctcctgtctccggtcccagaaactttcactccagctccacccct
tcctgttcttacggttacaaacggcccagctcccatacatcatcctcttcgccgcggggt
ggtcgctcccaatccaagtcgtcctcgcatcgtgacgagagccgccatcacagcaggagg
tcgtcttcgagcagccgcagctcaaagagacgcagagaagcgggagacttgtcgtacgca
gctgacgcaagcagcctggagctggaaaggcaaagctacctgcagtggagggaggcgtac
caagagtggtacgacaatttttacagcaacttcatcaaacagttccaccagctgccacct
cctccgcctcctccatgtcctcaagactctttctgcccactgcaaagtcgacgcacagcc
agcccctcttcatcggaggcctctagttatggccgctcccctcactctcagtcctcaagt
gacgcccgctccgtagcatctgacccctccgttgacagctgcttgtcagataaagccaac
gacagattgccgtctcgtcactccacgccaacagaagacccaactcagaccagggagact
tcagaaaactgcacggaaacgtcccggtcaggcacagtgacgaagagaagcggggaggcc
aactcacaagccataaaatccaacaccaatcaacaaacggtaaaaaatgctgataagtcc
agccactcaaatcacgagcaacagaagaagaaacgtgaacgagaaagaacttctgcttca
ctgggctctaaacgtgacctccgacaggataagaggtgcaacactgaaccaaaggccagc
gacgagggtcatccaggaccacacaaagctacccaatcagtccacaaacctctgaaaaca
gacaaacctttggataaagagtgtaaaagaaaggataaagaggagagtcatttgaaaaac
aagcaaagaagtaggaggagtcaagactccgagtcgagacaagacaagctgagaaaagac
aaattaaatcccagtaagggtccagacaccactgcctcagaaagagaatggcagcctgga
gacggtgaaggttcaggctcaagaccagaagtgaacagaaagagaagatgggaagataaa
agcaaaaatgagagggaaagtaatctcagtgttgtgtctaaaagcagaaaatgcccaata
actgaacctgctgaacctccaagctgtgacagtaaatgtctgaagctgtcggacagaaaa
aagcctaaaccagacaaaaagagtgaaagtttggctcagacgaacatatgggagggaggg
atgaaggtgattcctcagaaaaagataagtatcaacatcaacctggatgggaaaaggttg
gatgagaaaactggacaaataaacctgtttaattcagagattcagacacaaaccagagtt
caaactggtgttacagacggtacccacacagaagccagtaaaaaggaggagtcaagtccg
gcaaatttagcgaaagaaactgctgtccagcacgagatttccagcaaagctacaattaga
gatgacaaacaggagaaagcagaagaaaagagagaagcagagaacaaagaaacggaggat
ttggacctgtggcactgtgcgctcacgtgtgtagaggacgagagcctgacggggacagaa
gcagcacaagacgactgcagggacaaagttgcctcgtcgcagaaagaaggaagcgcacgt
agagaaagccgaggtgaagcacggcgggaggaggagatgacggcgaagcatcgaagaaag
cccacaaaccttcacggtggacagcacagcacgtcaaaagaggacagcacctctgtgagg
agcagctgtggagctggagggggtcagaagaagaagacgggggtgagaacacaagaagaa
agctcccaggaagctgaggtcacccagaacccacctggacaggtgtctcgctgcagatgg
gagaacagtggaaagaagcaaagccagatggagatcttgaactcggcagctctcccacag
ccgtctgtgactgtgagcggctgtgaaacgacgcagagcagtgaacagagacaaagatcc
acagagcgaaggagagacggggacagagggacaagaggcagagaccaggagaaagagact
cactcagctttgtccaacttgggtgtggatccctctggtggcgcaaagagggacgaggag
acgaggcccagtgaccgggagagaacacgagagagcgagaatcaaaaagagaggaaaaga
ctgaagcaaggaggaagagaggacgagtggaggagagacgagccgtcagtgcaaaagaga
taccagccctcctcttcctcagtgctgcacagcacagagaggagagagcggctgcagggc
ggcagcatcatgagctggaaacctttgagcagcagatgcatgtactcatcagaccagtac
tgtttcaaaaccaacatgggcaaaaagaacagttactattcgcaccaccatcaccagcct
ccatcaaactacagagagaagagcagacctgagcactccccaccttcaccatactataat
cactgtgaggaccaagacctgctcctctttgaacccattgaaaacttccagaaaggcttc
cctggtggggggtcgatgccaaacagaagtagaaatgagagcaaggcacatagaggagag
cagaggtccgagaagactccgagaggggggagagaaactccagagtttggggatggcagc
ggaggaggaggaaggcagaaggaagagaaggctcgtaaactggaggagaggcggaggtcc
agcagcgacagcgtgcgctcctcgtcgagccacatgaacgaccgagaggaccggagagac
agaggaagggagaaacggacgaagctgcaggaagtgaccgcatga
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integrated database retrieval system
