Nematolebias whitei (Rio pearlfish): 119421117
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Entry
119421117 CDS
T08042
Symbol
cacna1ha
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh04010
MAPK signaling pathway
nwh04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
119421117 (cacna1ha)
04020 Calcium signaling pathway
119421117 (cacna1ha)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
nwh04040
]
119421117 (cacna1ha)
Ion channels [BR:
nwh04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
119421117 (cacna1ha)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
119421117
NCBI-ProteinID:
XP_037544440
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All DBs
Position
15:complement(25574610..25738369)
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AA seq
1751 aa
AA seq
DB search
MTDGEGRVRFQYDECQEQGEVQDDVRLPVKSEPPGHDADPGGDQGEGKKEKKEDQEVVVE
KGKRGCSRPGEGAEWSAEVQEEKEPELEVEVGPTLGVRITAPIRDPDCVSEDEEQQPYPA
LTPVAFFCLKQTTRPRNWCLRMVCNPWFEHVSMLVILLNCVTLGMFQPCEDVTCLSEWCR
ILQVLDDCIFAFFAVEMVIKMVALGIFGSNCYLGDKWNQLDFVIVMAGVMEYSLDGHNAS
LSAIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFVFFIFGIVGVQLWAG
LLRNRCFLGEDIKTIYNLSINPYYMSEEGEDSPFICSAPRENGMLRCHSVPNHTEGGLEC
SLAPPLLSSPLIGSFPGVGGASINGCINWNQYYNVCRPGELNPHKGAVNFDNIGYAWIAI
FQVITLEGWVDIMYYVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQFSETKQRENA
LMREQRARFMSNDSTLASYSEPGSCYEEMLRYISHLYRKFRRRLQRMYYGWHSKRRKKVN
PNGSGCGGNGGGNGHGQGSSRGCGGSGPGTAMWLRPIHNLLQNHQHQHCQLSNGGQHTVS
VAPDEHMDKEGAGEELEMKDREESTNGNGGNNPNVITQGVGSLLGRLNGGMNYPTILPSF
VCSYGSKTPPSHSKQSGVSPEQRQSPSEHTEMLTKLYQLMGQHNPKSWVREAVKQKKESY
WSLLAVGTPEAAEEYRRAKQSAALAVAEATFQMWDEEAESGHFGVDLSITVAEVAKGDAN
RSESDDEKKSDNFDEDEKVEQFRDTELKMYSLMLTANGHIDPHGTVAPPIIMRTAATPMP
TPKSSLGPESILEEELLYRDGISQQSEGGLGLSEAGVDHVGSRRGSSTSIDPSAYDQRSL
SLSSPGRRSPLALRGSGSSWGSRRSSWNSLGRAPSLKRRDTSGERESLLSGEGGEEEEDG
QDENEEAGVNNRLKPGCVELQPPSPLGPSIITEYGDCNGRTQTYDPNVNSDLKDDFSTED
DLDDDSPFCYWVRREIHNIKPRWCKEHETWTLYLFSPESPVRIWCQSVISHKLFDHVVLV
FIFLNCITIALERPDIQLHSKERVFLSVSNYIFTVIFLAEMAIKVVALGFCFGKQSYLQS
SWNILDGVLVFVSLVDILVSLAYTSGNRILGILRVLRLLRTLRPLRVISRAPGLKLVVET
LITSLRPIGNIVLICCAFFIVFGILGVQLFKGKFYHCEGLDTKNITNKSDCLQANYRWIR
RKYNFDNLIQALMSLFVLSCKDGWVNIMYDGLDAVGVDQQPVRNHNPWMLLYFISFLLIV
SFFVLNMFVGVVVENFHKCRQDQEEEEARLREEKRLKMIDKKRRSKENGGAEAKQRPYYA
DYSPVRLSIHSLCTSHYLDLFITFIICINVFTMSIEHYNQPQYLEEVLKYCNYVFTFIFV
IEALLKLAAFGFQRFFKDRWNQLDVAIVALSIMGITLEELKMKAALPINPTIIRIMRVLR
IARVLKLLKMAKGMRALLDTVMQALPQVGNLGLLFMLLFFIYAALGVELFGKLECNENNP
CEGLSRHATFENFGMAFLTLFRVSTGDNWNGIMKDTLRECQPDDRHCISYLPWISPIYFV
TFVLMAQFVLVNVVVAVLMKHLEESNKEAKEDAEMDAEIALEMEEERQRRQSITSIKSSV
GGAHIGSCPNSPGEEEAEQCNDQDLLSTQKMSVSRMHSLPNDSYMFQPVRPASPPYPLKD
VEASSQHQYSV
NT seq
5256 nt
NT seq
+upstream
nt +downstream
nt
atgactgatggcgaggggagagtgcgctttcagtacgatgagtgccaggagcagggggag
gtgcaggacgacgtgaggcttcctgtaaaaagtgagcccccgggtcatgatgctgaccct
ggaggagaccagggcgaggggaagaaggaaaagaaggaggaccaggaggtggtggtggag
aagggaaagaggggctgtagtcgtccaggagaaggagctgagtggagcgctgaagttcag
gaagagaaggagccggagctggaggtggaagttggaccaacgctgggagttcgaatcaca
gctcccatccgtgacccggactgcgtctctgaggacgaggagcagcagccgtaccccgcc
ctgactcccgtggctttcttttgccttaagcaaacaacgaggccacgcaactggtgtctt
cgcatggtctgtaacccgtggttcgagcacgtgtccatgctggtgatcctgcttaactgc
gtgactctggggatgtttcagccctgcgaggacgttacctgcctgtcagagtggtgccgc
atcctacaggtgttggatgactgcatcttcgctttcttcgccgtggaaatggtcatcaag
atggtggcccttggaatttttggctcaaattgttacctcggtgataaatggaaccagctg
gactttgtcattgtcatggcaggggtgatggagtattctctggacggccacaatgccagt
ctgtcagccatccgtactgttcgagtacttcgaccgctgcgggccatcaacagagtacca
agtatgaggatcctggtgacactgctcctggacacgttacccatgctgggaaatgttctc
ctcctttgcttctttgtctttttcattttcggcattgtgggcgtccagctgtgggcggga
ctactgcgcaaccgctgcttcctgggagaggacataaaaacaatttacaacctgtctata
aatccttactacatgtcggaggaaggtgaagacagcccgtttatctgctctgcgccccgc
gagaacgggatgttgcgctgccacagtgtgccaaaccacactgagggcggactggagtgc
tcattggctcctcccctcctcagctctcctctgattggatcatttcctggagtgggaggg
gccagcattaacggctgcattaactggaaccagtactacaatgtctgtcgccccggggag
ctcaacccccacaagggagctgtcaactttgacaatattggctatgcttggatagccata
ttccaggtcatcactctggaaggatgggtggacatcatgtattacgttatggatgctcat
tccttctacaattttatatattttatactgctcattattgtgggctctttcttcatgatc
aacttgtgcctcgtggtcatagccacccagttctcggagacaaagcaaagagagaacgct
ctgatgagggagcagcgcgctcgcttcatgtccaacgactccaccctggccagttacagt
gaaccaggctcgtgctacgaagagatgctgcgatacattagccacctttaccgcaaattc
agacgcaggctgcagaggatgtactacgggtggcacagtaaacggcgtaaaaaggtgaac
ccgaatggcagtgggtgtggcggcaacggtggcggcaatgggcacggccagggttccagc
agaggctgcggaggctccggtccaggcaccgctatgtggctgaggccaatccacaacctc
ctgcagaaccatcagcatcaacactgtcaactcagcaacggcgggcagcacacagtcagc
gtggcgcccgatgagcacatggacaaagagggagcaggggaggagctggagatgaaggac
cgggaagaaagtacaaatggaaatggcggcaacaacccaaatgttatcacacaaggagtt
gggtcgttgcttgggcgactgaacgggggcatgaactatccgactattcttccatccttt
gtgtgcagctacggcagtaagacgccaccctcgcactcaaagcagagtggagtcagtcct
gagcagcgtcagtcaccgtctgaacacacggagatgctgaccaagctttaccaactcatg
ggacagcacaacccaaagtcctgggttagggaggctgtcaagcagaagaaggaatcctat
tggtccttgttggctgttgggactccggaggcagctgaggagtacaggagggccaagcag
tccgcagctttggctgttgctgaggcaacatttcagatgtgggacgaggaagcagagtct
gggcactttggggttgatctgtccataactgtggctgaggtcgccaagggagatgctaat
cggtccgaatcagacgacgaaaagaaatccgacaatttcgacgaggatgaaaaagtcgaa
cagttcagagacaccgagctaaaaatgtactctctgatgctaacggccaacggtcacatt
gacccccatggcaccgtggctcctccaattattatgcgcaccgcagcgacacccatgccc
acgcctaaaagctcattgggccccgagtccattttggaggaggaacttttgtacagagat
gggatatcccaacagagtgaaggtggactgggcttgagtgaggctggagttgaccatgtg
ggctctcgccgtggaagctcaacatccatagacccctcagcctacgaccagcggtcttta
agtctctcgagtccgggtcggcgttctcctcttgccctccgtggttcaggcagctcatgg
gggagccgtcgctccagctggaacagcctgggaagagcgccaagcctgaaaaggcgagac
accagcggagaaagggagagtttattgtcaggggaaggtggagaggaggaggaggacggc
caggatgagaacgaggaggctggggtcaacaacagactgaagccggggtgcgtggagctg
cagccaccatctcctctcggtccctctataataacagagtatggcgactgcaatgggagg
actcagacgtacgacccaaacgtaaactccgacctcaaagatgacttctcgacagaggat
gacttagacgatgacagtcctttctgctactgggtccggagagaaatccacaacatcaaa
ccccgctggtgcaaagaacatgaaacatggacgctctacttattttctccagagagccca
gttcgtatctggtgccaaagtgtgatctctcacaaactgttcgaccacgtggttctggtt
ttcatcttcctcaactgcatcaccatcgctctggagaggcctgatattcagctgcacagc
aaggagcgagtgtttctgagtgtgtccaactacattttcactgtgatcttcctagcagag
atggcaattaaggttgtagctcttggtttctgcttcgggaagcagagctacctgcagtct
agctggaacattttggatggggttttggtgtttgtgtccctggtggacatcctggtctct
ctggcctacacaagtgggaacagaatcctggggattctccgagtcctgcgccttctacgc
acactccgcccactcagggtgatcagtcgagccccaggtttaaagctggtcgtggagacg
ctcatcacgtctctcagacctattgggaacattgttttgatctgttgcgccttcttcatt
gtgtttggaatcctgggggtccagctcttcaaagggaagttctaccactgtgaaggtctg
gacactaaaaacatcacgaacaagtctgactgcctgcaggccaactaccgctggatacga
aggaagtacaacttcgacaacttgattcaggctctgatgtctctgtttgtgctgtcgtgt
aaggacggctgggtcaacatcatgtatgatggactggatgcagtgggagtggatcagcag
cctgtcaggaaccacaatccctggatgctgctctacttcatctccttcctgctcatagtc
agcttcttcgtgctcaacatgttcgtcggcgtggtcgtggagaacttccacaagtgtcga
caggaccaggaagaggaggaggcccgcctgcgagaggagaagaggctcaaaatgatagat
aaaaaacgcaggagtaaggagaatggaggggctgaagccaagcagaggccgtattatgcg
gactactctcctgtgcgtctttccatccactcactgtgcacgagccactacctggacctc
ttcatcaccttcatcatttgcatcaatgtcttcacaatgagcattgagcactacaatcag
ccacagtatttggaggaggtcctgaagtactgtaactacgtgttcaccttcatcttcgtc
atcgaggcccttctcaaacttgctgcatttggcttccaaaggttctttaaagacagatgg
aatcagctggatgttgccatcgttgcattgtccataatgggcatcactctggaggagctg
aaaatgaaagcagcattgccaataaatcccaccatcatcagaatcatgagagtactcaga
atagcaagagtgctgaaacttctgaagatggcaaaaggaatgagagctctgctggatacc
gtcatgcaagcgctgccgcaggtgggaaatctcggcctcctcttcatgctgctcttcttc
atctatgctgctctgggagtggagctctttggcaaactggagtgcaacgagaacaatccg
tgtgaaggtctgagtcgtcacgcaacgtttgagaactttgggatggccttccttacgctg
tttcgggtatccactggagacaactggaatgggattatgaaagacaccttacgagagtgc
cagccagacgaccgccactgtatctcatacctgccttggatctcgccaatttactttgtc
acctttgtgctcatggcccagtttgttctggtcaatgttgtggtggcagttttgatgaaa
catctagaagagagcaacaaggaggctaaagaggatgccgagatggatgcagagattgca
ttagagatggaagaggagagacaacgcagacaaagtataacatccatcaaaagctcggtt
ggaggggcccatattgggtcatgtcccaattcacctggagaggaggaagcggagcagtgc
aatgaccaggacctgctgtccacacagaagatgtctgtgtccaggatgcactctctgccg
aatgacagctatatgtttcaacctgtacgccctgccagccccccctaccctttaaaggat
gtagaggccagttcccagcaccagtattcagtgtaa
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