Nematolebias whitei (Rio pearlfish): 119421702
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Entry
119421702 CDS
T08042
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119421702 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwh03019
]
119421702 (xab2)
03041 Spliceosome [BR:
nwh03041
]
119421702 (xab2)
Messenger RNA biogenesis [BR:
nwh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119421702 (xab2)
Spliceosome [BR:
nwh03041
]
Complex B
Other components
Prp19-related factors
119421702 (xab2)
Complex C
119421702 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_8
TPR_12
TPR_15
TPR_16
ARM_TT21_C
ARM_TT21
TPR_MalT
NRDE-2
TPR_1
Motif
Other DBs
NCBI-GeneID:
119421702
NCBI-ProteinID:
XP_037544984
LinkDB
All DBs
Position
15:35180612..35188112
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AA seq
847 aa
AA seq
DB search
MPSQNGKADVIFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGPKSTLNMIYERALRELP
GSYKLWYNYLRERRKQVKGKCITEPVYEEVNNCHERSLVFMHKMPRIWIDYCQFLVTQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENAEEYIE
YLRSIGRLDEAALRLAAIVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQEEEDDIDLELRLARFEQLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGTPRHIINTYTEAVQTIDPMKATGKPHSLWVSFAKFYEENDQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPSKKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVETDERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
EMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTAHFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSSTGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELSKQANPDEINLDEDEDDDEQGPEEVQLEQKSVPTAV
FGGLTDD
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgccttcacaaaacgggaaagcggatgttatctttgaagatgatgatcttccttatgaa
gaggagattatcaggaatccatactctgtcaagtgttggatgcgctacattgaatttaaa
cagaatggacccaaatcaactctcaacatgatatatgagagagctctgagggaactgcct
ggaagctataagttgtggtacaattatctgagagagagaaggaagcaagttaaaggaaaa
tgtataaccgaaccagtctatgaggaggtcaataattgccacgaaaggtctctggtgttc
atgcacaagatgcctaggatatggattgattactgccagttccttgttactcagtgtaag
atcacaagaagtcggcgaacatttgatcgtgcactgagagctctaccagtaactcagcat
ccacgaatctggcctttgtatcttcgctttgtccgcaacttgcccctacctgagacagca
attcgggtctatcggcgataccttaagctttctccagaaaatgcagaagaatacattgaa
tacttgcggtcaattggccgtttggatgaggcagctttgcgactagcagctattgtcaac
gatgaaagctttgtgtccaaagagggcaagtctaattatcaactgtggcatgagctatgt
gacctgatttctcaaaatccagataaagtgacctctctaaatgttggagccatcatacga
ggaggccttacacgcttcacagaccaacttggaaaactttggtgctctttagctgactat
tacatcagaagtggccactttgagaaagcacgagatgtgtatgaggaagccatccttacg
gtggtaactgtaagggatttcacacaagtgtttgatagttatgctcagtttgaagagagc
atgattgctgcaaaaatggaaaccactgctgagatgggacaagaggaggaagatgacata
gatttggagcttagactggcacgctttgagcagctgattactcgtcgtcctctgttgctg
aacagtgtactactgaggcaaaacccccataatgttcatgagtggcacaaacgcgtaaaa
ctgtacgaaggaactccacggcatatcatcaacacatacactgaagcagtgcagaccata
gatccaatgaaggccactggaaagccacattctctctgggtttcttttgctaaattctat
gaagaaaatgatcagctggatgatgctcggacaatctttgagaaggctacaaaagtgaac
tacaagcaagtggatgaccttgctgcagtgtggtgtgaatatggagaaatggagcttcgc
catgagaactatgatcaggcattgcgcatactgaggaaagctacagccatcccatccaag
aaagctgagtactttgattcatctgagccagtccaaaacagggtatacaagtccttgaag
gtctggtctatgctggctgacttggaggaaagtcttggcactttccagtctacaaaagca
gtttacgaccgtattattgatctacgcattgccactccacaaatcatcatcaactatgcc
atgttccttgaagaacacaactactttgaggaaagctttaaggcttatgagcgagggatc
gctctcttcaagtggccaaatgtttatgacatttggaacacctacctgaccaagttcatt
gatcgctatgggggcaagaagttggagagagctcgggatttatttgaacaagccctcgat
ggctgccctgctaagtttgcaaagaccatttatctgttgtatgccaaactggaagaggag
tacggattagcgcggcatgccatggctgtctatgaaagagcaacacaggctgtggaaact
gatgagagacaccatatgtttaatatctacatcaagagagcagctgaaatttatggagtt
acatataccagagcaatttatcagaaggctattgaggtccttcctgatgagcatgcaagg
gagatgtgcctgcgatttgcagacatggagagtaaacttggtgagattgacagggccaga
gcgatctactcctactgctctcagatctgtgacccaagggtgacagctcatttctggcaa
acctggaaagaatttgagatccgccatggaaatgaggacaccattagagagatgttaagg
atcaagcgcagtgttcaggctacctacaacacccaggtcaattttatgtcctctcaaatg
ctgaaagctacaacaagctccacaggcactgtgtcagatcttgctcctggccagatggga
attgatgatatgaagatgttggagcagaaagcacagcagcttgctgcggaggctgaacaa
gacaaacccaaacctaaagaaaagattctgtttgtcaggagtgacacttctcgcagtgag
ttggctgagctttccaaacaggccaatcccgatgaaataaacctagatgaggatgaagat
gatgatgaacaaggaccagaggaggtgcagcttgagcagaagagtgtccccacagctgtc
tttggagggctcacagatgactga
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