Nematolebias whitei (Rio pearlfish): 119422112
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Entry
119422112 CDS
T08042
Symbol
cpsf4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119422112 (cpsf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nwh03021
]
119422112 (cpsf4)
03019 Messenger RNA biogenesis [BR:
nwh03019
]
119422112 (cpsf4)
Transcription machinery [BR:
nwh03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119422112 (cpsf4)
Messenger RNA biogenesis [BR:
nwh03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
119422112 (cpsf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_3
zf-CCHC
zf-CCCH_4
zf-CCHC_3
Nab2-like_zf-CCCH_
zf-C3H1
Motif
Other DBs
NCBI-GeneID:
119422112
NCBI-ProteinID:
XP_037545389
LinkDB
All DBs
Position
15:complement(21364065..21370049)
Genome browser
AA seq
267 aa
AA seq
DB search
MQDILANVDYIKFDLEIAVEQQLGAQPLPFPGMDKSGSAVCEFFTRGTCMKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPDSK
IKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLVGFCPEGKSCKFMHPRFELPMGTSEQPS
LPQQALNQTKTPVPTLNRTSHSLIQLTNCSPSQRPQNNLYTALQKNNFMPMNRGPRPLDQ
VTCYKCGEMGHYANKCTKGHLAFLSGQ
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacatactggccaacgtagactacatcaagtttgacctggagatagctgtggag
cagcagctgggagcgcagcctcttcctttccccggcatggacaagtccgggtcagctgtg
tgcgagttcttcaccaggggaacttgtatgaaaggggggatgtgtccgttccgtcacatt
agcggagagaagacggtggtgtgtaaacactggctccgaggactgtgtaagaagggcgac
cagtgcgagttcctccacgagtacgacatgaccaagatgcccgagtgctacttctactca
aagttcggcgagtgcagcaacaaggaatgtcccttcctgcacatcgatccagattctaag
atcaaagattgtccgtggtacgaccgaggtttctgtaaacatggccctgactgccgacac
agacacacgagaagagtgatctgtgtgaactacctggtgggcttctgtcccgagggaaaa
tcctgtaaatttatgcacccccggtttgagttgccgatgggaacctctgaacagccttct
ctgccgcaacaagccctaaatcagacaaagacgcccgtgcccaccctcaaccgcacgtca
cactccctcattcagctgaccaactgcagtccgagccagcggccgcagaacaacctgtac
accgccctccagaagaacaacttcatgcctatgaacagggggcctcgacctctggaccag
gtcacttgctacaagtgtggtgagatgggccattatgccaacaagtgcacaaaaggtcat
ctcgccttcctgagcggacagtaa
DBGET
integrated database retrieval system
