Nematolebias whitei (Rio pearlfish): 119422391
Help
Entry
119422391 CDS
T08042
Symbol
helz
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwh03019
]
119422391 (helz)
Messenger RNA biogenesis [BR:
nwh03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
119422391 (helz)
3'-5' decay
Other 3'-5' decay factors
119422391 (helz)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
zf-CCCH
AAA_19
UvrD-helicase
ResIII
PAM2
zf_CCCH_4
AAA_22
zf-CCCH_4
DUF2828
NPR3
AAA_16
AAA_5
eIF-3_zeta
Motif
Other DBs
NCBI-GeneID:
119422391
NCBI-ProteinID:
XP_037545683
LinkDB
All DBs
Position
16:18956295..19019629
Genome browser
AA seq
2035 aa
AA seq
DB search
MADRRAEKSCEEASKSLARREYEATVTHSTDALVVLAPQTSPSSGPVLSNPSSVVAIAPL
RSRALLYRIAAFLQLKNYDEANEDCKNVLAEEIARGDGSLRASLRTMLLDSSLEEVAVIL
SKALYGEPVNGIITKDLTRLKMLFSEIETVKREMAPEYTDDQDEEIQDGWQFRPPPRGVT
SSEEYTLCKRFLEQGLCRYGARCTSAHSQEELMEWQKRYASRLIRLKQQQESKHFTENYM
ETLIEKWMNSLSPEKVLSDSLEGVTAETSSSLSVTVTTKKSSHSWIFSLFCKPARKLFRI
ALLYDAHRPHFFITGVSAGDRLQPVSNGCQEWTPGEETVATDNGLDHCVYKIAVGFSTEI
FGTFRQTIVFDFGSEPVLMQRIMVDAASIEDLEHLMAARQQLLMTAKRWDSSCKTIVEFS
HNETMADMERSLLSRYQIPLSADQLFTQSVLDKTLTKDNYQARLHDLLYIEEIAQYKEVS
KFNIKVNMQLVTSFMLTGISVGAKYAQNGQLFARLKLTESLSEDTLAGRLVMTKVNSVLL
LPLGREGVISQPPSGVKERVYEAVIEEKTKEYIFLRICKDCCEELGLQPDREIQVELQFQ
LNRLPLCEMHYALDRIKDNNILFPDVSQVPTIPWSPNRQWDEQLDPRLNAKQKEAVLAIT
TPVSVHLPPILIIGPYGTGKTFTLAQAVKHILRQDNSRVLICTHSNSAADLYIKDYLHPY
VEAGNDHAKPLRVYFRNRWVKTVHPVVQQYCLISSTHVTFQMPTREDILRHRVIVVTLST
SQYLCQLDLEPGLFTHILLDEAAQAMECETIMPFALASKTTRIVLAGDHMQLSPFVYSEF
ARERNLHVSLLDRLYEHYPLEFPCRILLCENYRSHEAIINYTSELFYDGKLMASGKQPSH
KDFYPLTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEELRKKWPVAWGKLDDGSIGVVS
PYADQVFRIRAELRKKRMPEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKEQ
LFEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWEHFISICHEN
SSLHGITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRPLQGHQSSSQVLHPHHHPHPQ
HMQPASNKQGPQQQSPPKGKHANHAEHLPPEGYVQSNPAVLMGNPIQRFTPPLGGTSAGM
GKSPSPVQRIDPHTGTSILYVPAVYGGNMVMSMPLPLPWPSYQNRFAVDPRIMSHQAAVA
YNLNLLQPQNRGSPVPYSGVGHPSPLGMGQPSPEKELQADPIRNGKVEGCPKSEQTRLQT
PERKHTDLREKQGDLDTGQIRSLDPQTEGLVGFPNALLHRKDPPAPQRSLNYHLAPPSTA
FPSHPTGGRSFPQQYPVSRLPYRVNQPQHPGMAQQSQQQQLSPAFTGGNHGSFFSGSIPP
HRPVQSPTVDGTESGGVDEMNSSIRTQMGHAGGHHSGLPQQPHRVNNFGEAGPDGDSLDL
QNPLALEALSHQQQAARLGQWGEAARPFLQGNVAFPVPQQLAHLAQSGMARFPHQLLRAP
TWGHSANMDDESVPSASAGPSFNRYPGLLREIPPHDHQEPRDTAEMQPPPQSRLLQYRQS
QTRASDDPSSSLTVISNHTGPFPSGLYSHDAGRNLLNDNFLNNQALQQQHPGNTVYNTGS
YPNQPPAHSGSPPSSQVKYLLQEAQWSQSGGSSTSQQNHLLGNQSHGLLYGLPIMAHPSR
QEQVLMQLHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHHHQQQQQQQQHQQ
HQGPDSESYHPLSPRTSAATALHNVDEYEPRGPGRPLYQRRISSSYPDEPSPANAHNAHP
CPADPQDHQQMQHHPPYSYPSHDHLWPSNGGGPGPFQNIPCNGSSTLAQHRDLMASKVLR
QTEEQVKAEPAAAQPPHPHITSLQHQFPPLMSNKKQQQQQQQQPPPPQAPTEPTQGAPNL
NKPPTMSYASALRAPPKPRAVRPEQVKKNSDPLSLLQELSIGSSNGSNGYYSYFK
NT seq
6108 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaggagagcggagaagtcatgtgaagaagccagcaaatcgttagccaggcgg
gaatacgaggcgacggtcacccacagcacagatgccctggttgttcttgcaccccaaacg
tcaccctcaagtggtcctgtcctgtcaaacccttcatcggttgtggcaatcgccccccta
cgcagccgtgccctgctttaccgaattgctgcctttctacagctgaaaaactacgatgaa
gcaaatgaagactgcaaaaatgttctggcagaagaaattgctcggggagatggctctcta
cgggctagtttgcgcaccatgctgttggacagtagcctggaggaggtggcagtcattctg
tctaaagccttgtatggagagccagtgaatggcatcattacaaaagacttgaccagatta
aaaatgctcttctccgaaatagagactgtaaaaagagagatggccccagaatacacagat
gaccaggatgaagagatccaagatggctggcagttccggccccctcccagaggagtcacc
agcagtgaggagtacactctctgtaaaaggttcttggagcagggcttgtgtcgatatgga
gcccggtgtacgtcggctcactcacaggaggaattgatggagtggcagaaacgttacgcc
tcacgactcatccgcctcaaacaacagcaggagagcaagcacttcacggaaaactacatg
gaaaccctaatagaaaagtggatgaactctctgtccccagagaaagtgctaagtgacagt
ttagagggagtgactgcagagaccagctccagcctttctgttaccgtcaccaccaagaaa
tcctcgcactcctggattttttccttgttttgcaagccggctagaaagctgttccgcatt
gctctgctgtacgacgcccatcggccacacttcttcatcacaggcgtatcagctggggat
cgcctccaacctgtttccaatggctgccaggaatggactccaggggaggaaacggtggca
acggacaatggtcttgatcactgcgtctacaaaatagcggtgggcttcagcaccgagatc
tttggaaccttcagacagaccatcgtttttgacttcggctcagagcctgtgctgatgcag
cgcatcatggtggatgctgcttccattgaagacctggaacacttaatggcagccaggcag
cagctcttgatgacagcaaagcgctgggattcttcgtgtaagaccatcgtagaattcagt
cacaatgagacgatggctgatatggagcgtagcctcctttcccgctatcagatccctcta
tcagcagatcagctcttcacacagtcagtcctggacaaaactctgaccaaagacaactac
caggcacgactgcacgacctgctctacatagaggagattgctcagtataaggaagtcagc
aagtttaacataaaggtgaacatgcagctggtcactagcttcatgctaactggcatttct
gtgggagccaagtatgctcagaatggacaactttttgcacgactcaaactcactgaatca
ctttctgaggacacacttgctgggcgactagtaatgaccaaggtgaactcggtgttactg
ctgcctttaggccgagagggggtcatcagccagcctccctcaggagtcaaagagcgtgtt
tatgaggctgtgattgaggagaaaaccaaggagtacatctttctaaggatatgtaaggat
tgctgtgaggagctgggtctgcagcctgacagagaaatacaggtggagctacagtttcag
ctcaacagactgccactgtgtgagatgcactatgctctggatcgcatcaaagataacaac
atcctttttcctgatgttagtcaggtccccaccatcccctggagcccaaacaggcagtgg
gatgagcagctggatccccgtctgaatgccaagcagaaagaagccgttctggccatcacc
acaccagtttctgtccacctgcctccaattctcatcattgggccctatggtaccggcaaa
accttcactctggcacaggctgtcaagcacattcttcgacaggacaacagcagggttctg
atctgcactcattccaacagtgcagctgacctgtacattaaagactatcttcatccatat
gttgaagcaggcaatgaccatgccaaacctctcagggtatacttcaggaaccgctgggtg
aagactgtccatccagtggtccagcagtactgtctcatctccagcacacatgtcactttc
cagatgcccacaagggaggacatcctcaggcaccgcgtgattgtggtcacactaagcacc
tcccagtacctctgccagcttgatctggagcctgggttatttactcacatcctgttggat
gaagcagctcaggccatggagtgtgaaaccatcatgccttttgctctagctagcaagacc
acccgcattgtgctggctggggaccacatgcagctcagtccatttgtgtacagcgagttt
gctcgggagcgtaacctgcacgtgtccctgctggaccggctgtatgagcactaccccctt
gaattcccctgtcgcatccttctgtgtgagaactaccgctcccatgaagctatcatcaac
tacacgtcagagttattttatgatggcaagctcatggcaagtgggaagcaaccctcccat
aaggacttctaccctctgacgttcttcacagcccgaggagaagatgtccaggagaagaat
agcactgcctactacaacaatgctgaggtgtttgagatcgttgagagagtggaggagttg
cggaagaagtggccagtggcctggggtaagctggatgatggaagcatcggagtggtgtca
ccgtacgctgaccaagtgttccgcattcgtgctgagcttcgaaagaaaagaatgccagag
gtcagcgttgaaagagtgcttaacgtccaaggcaaacagttccgggtgttgtttctcagc
acagtgcgtacacgccacacctgcaagcacaagcagacagctatcaagaggaaagagcag
ctatttgaggactcgactgaggacctcgactatggttttctgtccaactacaagctgctc
aacacagccatcaccagagctcagtcactggttgcagttgtaggagaccctatagcactg
tgctctgttggacgctgcagaaagttctgggagcactttatttctatttgccacgagaac
tcgagcctacatggcatcacctttgagcagatcaaggctcagctggaggccctggagctc
aagaagacgtacgtcctcaacccgttggcgccagagttcatcccccgtgcactcagacct
ctgcaaggacaccagtcttcttcacaggtcctccatcctcatcatcaccctcatccacag
catatgcagcctgcctctaacaagcagggtccacagcaacagtctcctcccaaggggaag
catgcaaaccacgctgagcacctcccacctgaaggatatgttcagtctaaccctgctgtg
ttgatgggaaaccctattcagagattcacaccacctttgggtggaacatcagctgggatg
gggaagtcacccagccctgtgcagaggatcgatcctcatacaggcacaagtattctctat
gttccagctgtttatgggggaaacatggtcatgtccatgcctctgccattgccctggcca
agttaccagaaccgctttgcagtggatcctcgcatcatgagccaccaagcagccgtagcc
tacaacttaaacctgttacagccacagaaccgaggctcgcctgttccctacagtggggtg
ggacacccttcccctctaggaatgggccagcccagcccagagaaggagctacaggctgac
cccatcagaaatggtaaagtagaaggatgtccaaagtctgaacaaactcgtttacaaact
ccagaaagaaaacacacagacttaagagaaaaacagggggatttagacacaggccaaatt
cgaagcttagatccacagacagaaggactagttggatttcccaacgctctgcttcatcga
aaagaccctccagctccccaaagatccctcaactaccacctggctccacccagtactgct
tttccttcacatcctaccggtggaagaagcttccctcaacagtatccagtatctagactt
ccctatcgggtcaaccagcctcaacacccaggaatggcccaacagagtcagcagcaacag
ctcagccctgccttcactggtgggaaccatggttccttcttcagtggctccataccacct
catagacctgtccaatcacccactgtggatgggacagagtctggtggggtggatgagatg
aacagctcgattaggactcaaatgggccatgcagggggccaccactcaggcctgccacag
cagccgcacagagtcaacaactttggggaagctggacccgatggagacagtttggatctc
cagaatcccttggctctagaagccctgagccatcagcagcaagcagccagactaggtcag
tggggagaagcagcacgccctttcctccagggcaatgttgcctttcctgtgccccaacag
cttgcccacctcgcacaatctggcatggctcgatttccccatcaactgcttcgagcacct
acctgggggcacagtgccaatatggatgatgaatctgttccttctgcctctgctggccca
agtttcaacaggtacccaggcctcttgagagagatacccccacacgatcatcaggaacct
agggatacagcagagatgcaacccccacctcaatcccgtctcctccagtaccgacagtcc
cagacccgtgcctcggatgatccctcatcctccttaactgtcatttccaatcacactggc
ccttttccttcaggtctttactcccatgacgcaggtcgcaatctccttaacgacaacttt
ctcaacaatcaagctctgcagcaacaacacccgggtaacactgtatacaacacaggtagt
tacccaaatcagccaccagctcactctggcagccccccatcctcccaggttaaatacctt
ttgcaagaagcccaatggtcccaaagtggaggttcatctacatctcaacagaaccacctg
ttggggaaccagagtcatggccttctttatggactacccatcatggctcacccaagcagg
caggagcaagtgctgatgcaacttcaccagcagcaacaacaacaacagcagcagcagcaa
caacagcagcagcagcaacagcagcagcagcagcaacaacaacaacaacaacaacaacaa
caacaacagcagcagcagcatcatcatcaacagcaacaacagcagcagcagcatcaacaa
catcaaggtccagactccgagtcctaccacccactgtcccccagaacatcagcagccaca
gcccttcacaatgtagatgagtatgaaccaagaggtccaggtcggcctctttatcaacgc
cggatctcctccagctaccccgatgaaccgtctcctgccaacgcccacaatgcccatcca
tgtccagcagacccccaggatcatcaacaaatgcagcatcatcccccctacagttatccc
tcacatgaccacctgtggcccagtaacggaggaggtcccggtccatttcagaacattcca
tgcaacggatccagcacactggctcagcatcgggaccttatggcttccaaggtccttcgt
cagacagaagagcaggtaaaagccgagcctgcggccgcacagccaccacatccacacatc
acctcccttcagcaccagtttcccccacttatgtcaaataaaaagcagcagcagcagcag
cagcagcagccgccgccaccacaagctccaacagagcccacccagggggcaccaaaccta
aacaaaccccccaccatgtcgtatgcgagcgcccttcgtgctcctccaaaaccccgagct
gttcgacccgaacaagtgaaaaagaatagcgaccctctgtctctcctgcaagagttgagt
ataggaagttcaaatggtagcaatgggtactattcctactttaaatga
DBGET
integrated database retrieval system
