KEGG   Nematolebias whitei (Rio pearlfish): 119422796
Entry
119422796         CDS       T08042                                 
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
nwh  Nematolebias whitei (Rio pearlfish)
Pathway
nwh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nwh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    119422796 (exosc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nwh03019]
    119422796 (exosc1)
Messenger RNA biogenesis [BR:nwh03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     119422796 (exosc1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     119422796 (exosc1)
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1
Other DBs
NCBI-GeneID: 119422796
NCBI-ProteinID: XP_037546124
LinkDB
Position
16:11434795..11446489
AA seq 194 aa
MSPMKLCVPGDKLCSEEDCFPGAGVYRRHGYIYSALAGYVLKKNEGEKLPVISVVRETEA
QLLPDVGAIVTCKVTSINPRFAKVQILYVGSTPLKDRFRGTIRKEDVRATEKDKVEIYKS
FRPGDIVLAKVISLGDIQSNYLLTTSENELGVVVAHSEAGAQMIPISWCEMQCPWTQAKE
FRKVARVQPEYLQA
NT seq 585 nt   +upstreamnt  +downstreamnt
atgtcgcccatgaagttgtgtgttccaggtgacaagctctgcagtgaagaagactgcttt
ccaggtgctggagtatatcggcgacacggctacatatactcggcgctcgcgggctacgtg
ctcaagaaaaatgagggcgagaagcttccagtgatctccgtggtgagggaaacagaagca
caactactcccagatgttggagccatagtcacctgtaaggtgaccagcatcaaccccagg
tttgccaaagtccaaatcctttatgtcggctccacgccactgaaagaccgcttcagaggg
acgatcagaaaagaggacgtgcgagcaacagagaaggataaggtggagatatacaaaagc
ttcagacctggtgacatagtcttggcaaaagtgatttctctcggggacattcagtcgaac
tacttgttgacgacgtccgagaatgagctgggggtggtggtggcacacagtgaagcaggt
gcccagatgattcccatcagctggtgtgagatgcagtgtccgtggacacaggccaaggag
ttcaggaaagtggcgcgcgtgcaacccgagtatctgcaggcatga

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