Nematolebias whitei (Rio pearlfish): 119422796
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Entry
119422796 CDS
T08042
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119422796 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwh03019
]
119422796 (exosc1)
Messenger RNA biogenesis [BR:
nwh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
119422796 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
119422796 (exosc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
119422796
NCBI-ProteinID:
XP_037546124
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All DBs
Position
16:11434795..11446489
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AA seq
194 aa
AA seq
DB search
MSPMKLCVPGDKLCSEEDCFPGAGVYRRHGYIYSALAGYVLKKNEGEKLPVISVVRETEA
QLLPDVGAIVTCKVTSINPRFAKVQILYVGSTPLKDRFRGTIRKEDVRATEKDKVEIYKS
FRPGDIVLAKVISLGDIQSNYLLTTSENELGVVVAHSEAGAQMIPISWCEMQCPWTQAKE
FRKVARVQPEYLQA
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgaagttgtgtgttccaggtgacaagctctgcagtgaagaagactgcttt
ccaggtgctggagtatatcggcgacacggctacatatactcggcgctcgcgggctacgtg
ctcaagaaaaatgagggcgagaagcttccagtgatctccgtggtgagggaaacagaagca
caactactcccagatgttggagccatagtcacctgtaaggtgaccagcatcaaccccagg
tttgccaaagtccaaatcctttatgtcggctccacgccactgaaagaccgcttcagaggg
acgatcagaaaagaggacgtgcgagcaacagagaaggataaggtggagatatacaaaagc
ttcagacctggtgacatagtcttggcaaaagtgatttctctcggggacattcagtcgaac
tacttgttgacgacgtccgagaatgagctgggggtggtggtggcacacagtgaagcaggt
gcccagatgattcccatcagctggtgtgagatgcagtgtccgtggacacaggccaaggag
ttcaggaaagtggcgcgcgtgcaacccgagtatctgcaggcatga
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