Nematolebias whitei (Rio pearlfish): 119422851
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Entry
119422851 CDS
T08042
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
119422851 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nwh03021
]
119422851 (taf5)
03036 Chromosome and associated proteins [BR:
nwh03036
]
119422851 (taf5)
Transcription machinery [BR:
nwh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
119422851 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
119422851 (taf5)
Chromosome and associated proteins [BR:
nwh03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
119422851 (taf5)
STAGA complex
119422851 (taf5)
TFTC complex
119422851 (taf5)
SAGA complex
119422851 (taf5)
SLIK complex
119422851 (taf5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_IFT122_1st
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
TFIID_NTD2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
Beta-prop_WDR36-Utp21_1st
Beta-prop_VPS8
Beta-prop_WDR75_1st
NBCH_WD40
WD40_MABP1-WDR62_1st
DSE1_N
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_Aladin
WDR90_beta-prop_4th
PAC11
CFAP251_N
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_WDR41
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_WDR19_1st
ASA1
Tricorn_2nd
Beta-prop_DCAF12
Beta-prop_NOL10_N
DNAI3_WD
Beta-prop_Nup120_160
WD40_like
eIF2A
LisH_PAC1
WD_LRWD1
PROPPIN
Beta-prop_WDR11_2nd
CDK5RAP3
LisH
Motif
Other DBs
NCBI-GeneID:
119422851
NCBI-ProteinID:
XP_037546188
LinkDB
All DBs
Position
16:12913885..12919926
Genome browser
AA seq
740 aa
AA seq
DB search
MAAVQVGLIDAKEEIDVKTEPSSDGFGNNNASDSRLLSTPPGSSTAAGNNKPAAGTPEEQ
QTLLAVLQFLKKNKLSESAEILRREAGLPEDALDPKGADGTGSGLGAAAGGVDVLSRVTV
SSSAGALAPTKAGEDQPDVSVVLSAYSQQGDPALYDVYYSSLKKFIESVLDCHRAELSQV
FYPLFVHMYLELVYNNHESEAKAFFEKFSGDQECYYEEDLRVLSSLTKKEHMRGNETLLD
FRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQIDAMSGSL
AGEARREANKAKVYYGLLKEPEIELPLDDEDEEADNEEGKPKKKKPKKDNVGSKSKKQDP
NAPLQNRIPLPELKDSDKLDKIMYMKEATKKIRLGPDNLPSICFYTFLNAYQGLTAVDFA
DDSSLIAGGFADSTVRVWSVTPKKLRKVKTAADLNLIDKESDDVLERIMDEKTASESKIL
YGHSGPVYGISFSPDRNYLLSCSEDATIRLWSLQTFTCLVGYKGHNYPVWDTQFSPHGYY
FVSGGHDRVARLWVTDHYQPLRIFAGHLADVTCTRFHPNSNYVATGSSDRTIRLWDILTG
NCVRIFTGHKGPIHAINFSPNGKFLASGATDGRVLLWDIGHGLMVGELKGHTDTVYSLRF
SRDGEILASGSMDNTVRLWDVTKAIDDLETDDFTATTGHVHLQDNSQELLLGTYMSKSTP
VVHLHFTRRNLLLAAGAYNP
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtgcaggtaggtctgatcgacgcgaaagaagaaatagacgttaaaacagaa
ccgtcgagcgatggctttggaaacaacaacgccagcgacagcaggctgctttctacgccc
cccggctccagcaccgcggccgggaacaacaaacctgcggcgggaacccccgaggaacag
cagacgctgctggcagtcctgcagttcctcaaaaagaacaaactgtctgagtccgccgaa
atcttgcgccgtgaagcagggttacccgaggatgctctggatccgaagggtgcggatggc
accggctcgggactcggagccgcggcgggaggtgtggatgtgctcagccgggtgaccgtc
tcttcctccgccggagctctggcgccgaccaaggctggggaggatcagccagatgtcagt
gtggtgctgtcagcctacagccagcagggagatccagctctctacgacgtttactacagc
agcctgaagaagttcatcgaatcggttttggactgccaccgagcagagctgtcccaggtc
ttctacccgctgtttgtccacatgtacctggaactcgtgtacaacaatcatgaaagtgag
gccaaggccttctttgaaaagttcagtggagaccaggagtgctactatgaggaggacctg
cgtgttttatccagcctgaccaagaaggagcacatgagaggcaacgagaccctgctggac
ttccgcaccagcaagtttgtcctgcgcatctctcgtgactcctaccagctgctgaagagg
cacctgcaggagcggcagaacaatcagatctggaatatcatccaggagcacctctacatc
gacatctttgatgggatgccgcgcagcaagagccagatcgacgcaatgtccggcagcctg
gcaggagaggccaggcgagaagccaataaggcgaaggtttactatggcctgctgaaggag
ccagaaatcgagctgcctcttgatgacgaggatgaggaggcagacaatgaggagggtaaa
cccaagaagaaaaaacccaaaaaggacaacgtaggctccaaaagtaaaaagcaggatcca
aatgctccgttgcagaacaggattcctcttccagagctcaaagactccgacaagttggac
aagatcatgtacatgaaggaggccaccaagaagattcgtttaggaccagataacctccct
tccatctgcttctacacttttctcaatgcgtatcagggtctgactgcagtggacttcgca
gacgattccagcctgatcgcaggaggttttgctgactccacagttagggtgtggagcgtc
acgccaaagaagctccgcaaggtcaaaacggctgcagacttgaatctgattgacaaggag
tcagacgatgttttggagaggattatggatgagaaaacagccagtgagtccaagattctt
tatgggcacagtgggccggtgtatggcatcagcttcagcccagacagaaattacctcttg
tcgtgttctgaggatgctactatcaggctgtggagcctccagacttttacttgtctcgtg
ggctacaaaggacacaattacccggtgtgggacacgcagttttcgcctcacggatactat
tttgtctcagggggacacgaccgtgtcgcccgcctttgggtgacagatcattaccagcct
ctgcggatatttgcgggtcacctggctgacgtcacatgtactcgtttccatccaaattca
aactacgtcgccacggggtcatccgaccgcaccatccgcctctgggacatccttactgga
aactgtgtccgcatcttcactggtcataagggtccgattcacgccatcaacttctcgccc
aacgggaagttcttggcatccggagccactgatggaagagttcttctgtgggacatcggt
cacggactgatggttggcgaactgaagggtcacacagataccgtctattccctacgattt
agcagagacggagagattctcgcctccggttctatggacaacacggttcgcctgtgggac
gtcacgaaagcgattgacgatttagagactgatgacttcacagccaccactggacatgtc
catctacaagataactcccaggagcttttgctcggcacctacatgtctaaatcgacgccg
gtcgtgcaccttcacttcacacggaggaacttgcttctggctgcaggcgcctacaatcca
taa
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