Nematolebias whitei (Rio pearlfish): 119423041
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Entry
119423041 CDS
T08042
Symbol
ddx21
Name
(RefSeq) nucleolar RNA helicase 2
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
nwh03009
]
119423041 (ddx21)
03036 Chromosome and associated proteins [BR:
nwh03036
]
119423041 (ddx21)
Enzymes [BR:
nwh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119423041 (ddx21)
Ribosome biogenesis [BR:
nwh03009
]
Eukaryotic type
Pre-60S particles
Helicases
119423041 (ddx21)
Chromosome and associated proteins [BR:
nwh03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
119423041 (ddx21)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
DD_DDX21-DDX50
ResIII
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
119423041
NCBI-ProteinID:
XP_037546381
LinkDB
All DBs
Position
2:14492610..>14500896
Genome browser
AA seq
753 aa
AA seq
DB search
MPSKVIFESEEHTMDEDVDTVAEATTLKMKTKEEKKKKKKKQEQEVEEQEDAGCDPPAPK
KKKKKDKLAADQVNGHIDETTDINGDCNGVESPKQKTKKKKESSEKNKKPKKANAEAATN
GHSTPNTPVQTPVQTPSQSSDDSASDSERENEQTPEQREGAFSNFRISQVTIEKLKARGV
SYLFDIQVKSFNPVYDGEDVIAQARTGTGKTFSFAVPLVEKLQMESVERARGRPPKVLVL
TPTRELAIQVAKDFKDIIKRLTLCCFYGGSSYKPQIDSIRTGIDILVGTPGRIKDHLQNN
KLNLAELKHVVLDEVDQMLDMGFAEQVEEILSCSYKKDGSANPQTLLFSATCPPWVYDVA
KKYMRPECKHIDLIGKKTQKAATTVEHLAITCHWSQRAAVIGDVIQVYSGSHGRTIVFCE
TKREATELSLNESIKQSAQSLHGDIPQKQRETTLKGFRNGAFEVLVATNVAARGLDIPEV
DLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEDQLRYVEHKAGITFRRVGVP
TANDIIKSSSKDAMKFLDSVPATAVEYFREFAEKLIEEKGAVDALAAALAHISGATSVEM
RSLLNSDSGYTTIQLQCSQEMHNIGYAWKSIKEQLGEEFENQIHRMTFLKGKTGVCFDVP
ADKVKEIQENWRDNRRWQLTVATELPELEEKPLGNRGDRGFGNRGDRGGFRGGRGRNSWG
NGGRSNGYRSGGGGGGYGNRGGHKRTFSQAFDY
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcaaaagtcatctttgaaagcgaggaacataccatggatgaagatgtggacact
gtcgcagaggctacgaccttaaagatgaagaccaaggaggagaagaagaagaagaagaag
aaacaggagcaggaggttgaagagcaggaggatgcaggctgtgaccctcctgccccaaag
aagaaaaagaaaaaagacaagctggcagcggaccaagtcaacggccacatcgatgagacc
actgacataaatggagactgcaatggtgttgaatcacctaagcagaaaaccaagaagaaa
aaggaatcatctgagaaaaacaagaaaccaaagaaagcaaacgcagaggcagcgaccaat
ggacattccaccccaaacacaccagttcaaacccctgtccagacaccatcccagtccagt
gatgactcagccagtgacagcgaacgtgaaaatgagcagacacctgagcagagagaaggg
gcgttctccaacttcagaatctcccaagttactattgaaaaactgaaagctcggggagtc
tcctacttgtttgacattcaggtaaagtcgttcaatcctgtgtatgacggcgaggatgta
attgctcaagcccgcacaggaacaggaaagactttctcctttgctgtacctttggtggag
aagctccagatggaatcagtagagagggccagagggcggcctcctaaggtgctggttctg
actcctaccagagagttggctatccaagttgcaaaggacttcaaggacatcatcaagaga
ctgacactatgctgtttttatggaggcagctcatacaagccacaaatcgattccatacgt
actgggattgatattttggtgggaactcctggtcggattaaagatcaccttcagaacaat
aagctcaacctggctgaattaaaacatgttgttctggatgaagtggaccagatgttggac
atgggctttgcagaacaggttgaagagattttgagttgttcatacaagaaagacggctct
gctaacccacagactcttctgttttcggccacctgccccccctgggtgtatgatgtggcc
aagaaatacatgagacctgagtgcaagcatattgacttgattggcaagaaaacacaaaaa
gctgcaacaacagttgagcatttggccattacatgtcactggtcacagcgtgcagccgtc
ataggagacgtgatccaggtttacagcggcagccacggcaggaccatcgtcttctgtgag
acaaaaagggaggccactgaactttccttaaacgaatccatcaaacagagcgcccagtcc
cttcatggtgacattccacagaaacagagggagacgacactgaaaggcttcaggaacggt
gcctttgaggttctggttgccaccaatgttgcagctcgtggattagacatccctgaagtg
gacctggtgatccagtcgtctcctcctaaggatgtagagtcgtacatccatcgttcagga
cgaacgggccgcgcaggcaggactggagtctgcatctgcttctatcaaaggaaagaagag
gaccagctgcgctacgtagaacacaaagcaggaatcacattcaggcgagtgggtgttcca
actgctaatgatatcatcaagtcatcgagcaaagatgcaatgaagttcctagactctgtt
ccagccacagctgttgaatattttagagaatttgctgagaagctgattgaagagaaagga
gcagtagatgctctggctgctgctctggcccatatttctggagctacaagtgtagaaatg
cgatcgctgctcaactctgattctggttacaccactatacagctgcagtgctcgcaggag
atgcataatataggctatgcttggaaatccatcaaagaacagcttggagaggagtttgaa
aaccagattcacaggatgaccttcctgaaaggcaaaactggagtttgttttgatgttcca
gctgataaagtcaaagagatccaggagaattggagagacaaccgccgctggcagctgact
gtagccacagagctcccagagctggaggagaagccactcggtaaccgtggtgacagaggc
tttggtaaccgtggtgacagaggggggttccgaggcggcagggggcgaaattcttgggga
aacggtggccgtagcaacgggtaccgaagtggcggtggtggaggaggatatggaaacaga
ggaggacacaaacgaaccttcagccaagcttttgattactga
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