KEGG   Nematolebias whitei (Rio pearlfish): 119423218
Entry
119423218         CDS       T08042                                 
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
nwh  Nematolebias whitei (Rio pearlfish)
Pathway
nwh03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:nwh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    119423218 (taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nwh03021]
    119423218 (taf5l)
   03036 Chromosome and associated proteins [BR:nwh03036]
    119423218 (taf5l)
Transcription machinery [BR:nwh03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     119423218 (taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     119423218 (taf5l)
Chromosome and associated proteins [BR:nwh03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     119423218 (taf5l)
    STAGA complex
     119423218 (taf5l)
    TFTC complex
     119423218 (taf5l)
    SAGA complex
     119423218 (taf5l)
    SLIK complex
     119423218 (taf5l)
SSDB
Motif
Pfam: WD40 Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 Beta-prop_IFT122_1st WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd TFIID_NTD2 EIF3I Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_SCAP DSE1_N WD40_MABP1-WDR62_1st Beta-prop_Aladin ANAPC4_WD40 WDR90_beta-prop_4th NBCH_WD40 PAC11 CFAP251_N Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_WDR41 Beta-prop_VPS8 Beta-prop_NOL10_N RMC1_N Beta-prop_HPS5 ASA1 Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_DCAF4 Beta-prop_Vps41 Tricorn_2nd Nbas_N Beta-prop_WDR19_1st PROPPIN PEP5_VPS11_N Beta-prop_IP5PC_F WD_LRWD1 WD40_like PD40 BCAS3_WD40 Tricorn_N
Other DBs
NCBI-GeneID: 119423218
NCBI-ProteinID: XP_037546552
LinkDB
Position
16:42734847..42746436
AA seq 600 aa
MKRVRAEQIQHAVAQYLKRRQYVDTEGSLKGVRLSQSAEEMAASLTAQVESGCTNIVSAA
PCQSDPQQYETQYSRLRSFLSETELSWAQEVSSLLYPIFVYLHLDMVRCCLKGAVDSFYS
RFHDAFLQDSEQRAVVEQLRHVLTAQDVAANAKLRAFLEHKYVVHLTEPTYSYLLRYLQS
EDNSTLCRVLGTHVQVEVTASKRTDYQLYGATAGSTTAPNSTSSWAGVDGAEGGEGMEVP
AGIPQSEAALDALQDCIKKVREGPPSLTTVCFYAFHHTEQTLNTAEVSPDSRLLAAGFDS
STVKLWSLRARKLKAKSHQADVSHIHLACDILTEETEEEDGCGSEIKTLRGHSGPVYRTT
FLTDSSGLLSCSEDATIRYWDLGSFTNTALYQGHAYPVWDVDVSPCSLYFASSSQDRTAR
LWTFSRTFPLRLYSGHLSDVDCIKFHPNSNYLATGSTDKTVRLWSTQQGASVRLFTGHRG
PVMSLTFSPNGKYLASAGEDQRVKLWDLASGTLFKDLRGHTDSVTSLSFSPDSSLVASSS
MDNSVRVWDIRSSHGGTPSDGSSSELVGLYTGNTSNVHNVQFMACNLLLVTGTAQEKTEL
NT seq 1803 nt   +upstreamnt  +downstreamnt
atgaaacgggttcgcgctgagcagatccaacatgctgtggctcagtacctgaagaggagg
cagtacgtggacaccgagggctccctgaagggggtcaggctctcccagtcggctgaagag
atggctgccagcttgacagcacaggtggagtcgggctgtaccaacatcgtctctgctgct
ccctgccagtccgacccacagcaatatgagacccagtactccaggctgcgctcctttctc
tcagaaacggagttatcctgggcccaggaggtgagcagcctcctctatccaatctttgtc
taccttcacctggacatggtgcgctgctgcctgaagggagccgtggatagtttttacagt
cgttttcatgacgccttccttcaggacagtgaacagcgagctgttgtggagcagctccgc
catgttctcactgcacaggatgttgcagccaatgccaagctgagagcgttccttgagcac
aagtacgtggttcatctgaccgagccgacctatagctacctgctgcggtacctgcagagt
gaggacaacagcaccctctgcagggttctcggcacacacgtgcaggtggaggtcactgct
tccaaacgtacagattaccaactgtatggagccactgctgggtccacaacagccccaaat
tccacatcctcctgggcaggtgtggatggagcagagggtggggaggggatggaggtccct
gcagggatcccgcagagcgaggctgccctcgatgcacttcaggattgcattaagaaagtc
cgagagggcccgccctcgctcaccacagtctgtttttatgccttccatcacacggagcag
acgctgaacacggctgaggtctcgcctgacagccggctgttggctgcaggctttgacagc
tctacagtgaagctgtggagcctcagagctcgaaaactgaaggccaaatcccaccaggct
gatgtgtcgcacatccacctggcatgtgatatactgacggaggagacggaggaggaggac
ggctgcggcagtgagataaaaactctacgaggtcacagtggtccagtgtaccgtaccacc
ttcctgacggacagctctgggctgctgtcctgctctgaggacgcaaccattcgctactgg
gacctgggcagtttcaccaacacggcgctgtaccagggccacgcctacccggtgtgggac
gtggacgtcagcccctgcagtttgtattttgccagcagctcacaagaccgcaccgcccgc
ctgtggacgttctctcgcacctttccactgcggctgtactcggggcacctctccgacgtt
gactgcatcaaattccacccaaactccaactacctggccacgggctccacagacaagact
gttcgtctgtggagcacccagcagggggcgtcggttcgcctcttcaccggccaccgtggc
ccggtgatgtcactcacgttctcccccaatggcaagtacctggcttcagctggggaggac
cagcgtgtgaagctgtgggacctggcgtcggggactcttttcaaagacttacgaggacac
acagacagcgtcaccagcctgtccttcagtccagacagcagcttggtggcgtcctcctct
atggacaactctgtacgggtgtgggacatccgcagctcccatggtgggacaccctctgac
ggctcgtccagcgagttggtgggactgtacaccgggaacaccagcaacgttcataacgtc
cagttcatggcctgcaacctgctgctggtgacggggacggctcaggagaagacagaactg
tag

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