Nematolebias whitei (Rio pearlfish): 119423251
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Entry
119423251 CDS
T08042
Symbol
htt
Name
(RefSeq) huntingtin
KO
K04533
huntingtin
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwh03019
]
119423251 (htt)
04131 Membrane trafficking [BR:
nwh04131
]
119423251 (htt)
03029 Mitochondrial biogenesis [BR:
nwh03029
]
119423251 (htt)
Messenger RNA biogenesis [BR:
nwh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
119423251 (htt)
Membrane trafficking [BR:
nwh04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
119423251 (htt)
Mitochondrial biogenesis [BR:
nwh03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
119423251 (htt)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_GCN1
HEAT_EF3_N
HEAT_ECM29
Motif
Other DBs
NCBI-GeneID:
119423251
NCBI-ProteinID:
XP_037546596
LinkDB
All DBs
Position
16:2761575..2802602
Genome browser
AA seq
3080 aa
AA seq
DB search
MATMEKLMKAFESLKSFQQQQGPPTAEELVQKQKKEQAATKKDRVTHCLTICENIVAQSL
RTSPEFQKLLGIAMEMFLLCSDDSESDVRMVADECLNKIIKALMDSNLPRLQLELYKEIK
KNGASRSLRAALWRFAELAHLIRPQKCRPYLVNLLPCLSRIAKRQEETVQETLAAAVPKT
MAALGHFANDGEVKVLLKSFVANLKSSSPTIRRTAASSAVSVCQHSRRTSYFYTWLLNVL
LGLLVPVDDERPSHLILGVLLTLRYLIPLLQHQVNTTSLKGSFGVMRKEADVQPTPEQLL
QVYELTLNYTQHWDHNVVTAALELLQQMFRTPPPELLHMLITAGSIPHATVFRQDAESRA
RSGSILELIAGGGTSCSPLLLRKQRGKMLSGEEDGLEDDPERTEATAGAFTDGSSAAQVD
IITEQPRSSQHALQPGDSVDLSTSSEQGGGGWTSASGTPESPNGNEEEMLSRSSSGANVT
PETADYTTPENATPEGGPLGEGGTLLGPTDLSLPPSDSSQTTTEGPDSAVTPSDVAELVL
DGSESQYSGMQIGTLQDEEDEGAAPSSQDKPSEPFLQSALALSKPHLFDGRGHNRQGSDS
SVDRFIPKDEPAEPEPDSKPSRIKGPIGHYTDQDLEPLVHCVRLLAASFLLTGQKNDPIP
DKEVRVSVKALAVSCIGAAAALHPEAFFNSLYLEAPKGVPAEERQYISDVLCLTDHGDPQ
IRGATAILCGAIVQAALTKTRFNIHTWLAGVQSATGNPLSLVDLVPLLQKTLKDDSSVTC
KMACSAVRHCIMTLCSSTLSELGLQLVIDLFALRDCSYWLVRTELLETLADLDFRLVNFL
ERKTDALHKGDHHYTGQLRLQDRVLNDVVIHLLGDDDPRVRHVAASAVSRLVPRLFYDCD
QGQADPVVAITRDQSSVYLQLLMHETQPPSQFTVSTITRTYRGYNLSSSVSDVTLENNLS
RVVTKVSHAFTSSTSKALTFGCCEALCLLASNFPVGTWSTGWHCGYASSSSNFSSRSSLN
RSRGRTLSSSQTSNTPASSTTSSSAPDSERRTLTVGTANMVLSLLSSAWFPLDLSAHQDA
LLLSGNLLAAVAPKCLRNPWAGEDEGSGGTISGGPNKMEEPWPALSERSLVVMVEQLFSH
LLKVLNICAHVLDDAAPGPAMKAALPSLSNTPSLSPIRRKGKEKEAAEPNPSPMSPKKSN
EVNTGRPADGAGGSTAVSKSTTLGNFYHLPPYLKLYDVLKATHANYKVTLDLHSSQEKFG
SFLRAALDVLSQLLELATLHDIGKCVEEILGYLKSCFSREPTMATVCVQQLLKTLFGTNL
ASQYEGVLTGPSRSQGKALRLGSSSLRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQE
QDTSGWFDVMQKASNQLRSNIANATRHRGDKNAIHNHIRLFEPLVIKALKQYTTSTSVAL
QRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRDSEAIIPSIFFFLVLL
SYERYHSKQIISIPKIIQLCDGIMASGRKAVTHAIPALQPIVYDLFVLRGSNKADAGKEL
DTQKEVVVSMLLRLVQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADVILPMIAKQQML
LDSPEALGVLNTLFETVAPSSLRPVDMLLKSMFTVPATMASVSTVQLWVSGILAVLRVLV
SQSTEDIVLSRVHELSLSPHLLSCHTICRLHQHGPSPSDPSAADAVSNQETNGEAQKVPP
EETFARFLLQLVGVLLDELSSRRAKVDITEQQRTFYCQQLGTLLMCLIHVFKSGMFRRIT
AAATRLLKDEDGRTGTEAGLFYHLERLNGMVQSLVTTHPSLVLLWCQVLLIINYTNYSWW
VEVHQTPRGHSLSSTKLLSPHSSGEGEEDQSASQLAMANREIVRRGALILFCDYVCQNLH
DSEHLTWLIVNHVRDLISLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCDNLTTPTMLK
KTLQCLEGIHLSQSGSLLMLYVDKLLNTPFRVLARMVDTLACRRVEMLLAETLQNSKAQL
PVEELERIQEYLQTSGLAQRHQRFYSLLDRFRATVTDTSSPPPPVTSHPLDGNPPPAPES
VATDKEWYVALVKSQCSLLGDVSLSETTELLTKLPPDELFSVMRGKDFNLRLLCPCLSMG
VQRSARGQGLLLVETAWQVTLEKLSEVTGSLPVPHQSFLPPPQPQPYWNQLDDVFGGPGF
YPTVLSLCRALSQYLLSISQLPPSLHLPPDREHLITTFTCTATEVIVWRLLQDQLPLSVD
LQWSLSCLCLALQQPCIWNKLSTPEYNTHTCSLIFCLRLIITAVAVSPGDRLLHPEKKRP
RGEKTAEGDQVDLGNPEFKYEWEACEIMAELVEGMQSILSLGHPRNSAFPAFLTQTLRNI
VISLSRLPLVNSYTRVPPLVWKLGWSPQPGGDFGTTLPEIPVDFLQEKDVFREFLYRINT
LGWSNRTQFEETWATLLGVLVTQPITMDQEEETHQEEDLERTQLNVLAVQAITSLVLSAM
TLPTAGNPAVSCLEQQPRNKSLKALETRFGRKLAVIRGEVEREIQALVSKRDNVHTHHPY
RAWDPVPSLSAASAAGTLISHEKLLLQINTERELGNMDYKLGQVSIHSVWLGNNITPLRE
EEWGEDEEDEADTPAPASPPISPINSRKHRAGVDIHSCSQFLLELYSQWLIPGSPSNRRT
PTILISEVVRSLLAVSDLFTERNQFDMMFSTLMELQKLHPPEDEILNQYLVPALCKAAAV
LGMDKVTAEPVCRLLETTLRSTHLPSRMGALHGVLYVLECDLLDETAKQLIPAVSEYLLS
NLKGIAHCVNLHNQQHVLVMCAVAFYMMENYPLDVGAEFMAGVIQVCGVMVSASEDSTPS
IIYHCVLRGLERLLLSEQLSRVDGEALVKLSVDRVNMPSPHRAMAALGLMLTCMYTAVLA
SGSGASGVRGQVDSAVAEAVGVTAGHVGFSSGKEKASPASRPAHPDPQAPDSESVIVAME
RVSVLFDRIRKGLPSEARVVSRILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFMATVV
YKVFQTLHATGQSSMVRDSV
NT seq
9239 nt
NT seq
+upstream
nt +downstream
nt
atggctaccatggagaaactcatgaaggccttcgagtctctgaagtcatttcagcagcag
caggggccaccgacagccgaggagcttgttcaaaaacagaaaaaagagcaagctgcaaca
aagaaggaccgggtgacccactgcctgacaatatgtgaaaacatcgtggctcagtctctg
agaacatctccagagtttcagaagctgcttgggattgccatggagatgttccttctctgc
agcgatgacagtgaatcagatgtccggatggttgccgatgagtgtctgaacaaaatcatc
aaagcgctgatggactcgaacttgcctagactgcagctggagctgtacaaagaaattaaa
aagaacggtgcctcgcggagtttaagggcagctttgtggaggtttgctgagcttgctcat
ctcatccgaccccagaaatgcagaccttatctggtcaacctgctgccatgcctctccaga
atcgccaagcggcaggaggaaacggtgcaggagacgctggcagcagccgtgcccaaaacg
atggcagccttgggacactttgccaacgatggcgaggtcaaggtgctgctgaagtcgttt
gttgccaacttgaagtccagctcccccaccatccggcgcacagctgccagctcggccgtc
agcgtgtgccagcactccagacgcacaagctacttctacacctggctccttaacgtgctg
ttgggcctgctggttccagtggacgatgaacgccccagccacctgattctgggggtgctg
ttaactcttcgctacctgatccctctgctgcagcaccaggtcaacaccaccagcctcaag
ggaagcttcggagtcatgaggaaggaggctgacgtgcagccaacgcctgaacagctgctt
caggtttacgagctgaccctgaactacacacagcactgggatcacaatgtggtcacagct
gctctggagctcctgcagcagatgttcaggacccctccacccgagctcctgcacatgctc
atcacagccggcagcatcccacacgccaccgtgtttcgtcaggacgcggagagccgcgca
cgttcaggcagcatcctcgagctcatcgcggggggagggacttcctgcagtccactactt
ctcaggaaacagagaggtaagatgctttctggggaagaagatgggctggaagacgaccct
gagaggacggaggccactgctggagccttcacagatggctcctctgccgcccaggtggac
atcatcactgagcagccacgctcttcccagcatgcactgcagccgggtgactctgtggac
ctcagcacctcctccgagcagggcgggggaggctggacgtctgcatcaggcacccctgaa
tcacccaatggcaacgaggaggagatgctcagtcggagctccagtggggccaacgtgacc
ccagagacggccgactacaccacaccagaaaacgccactccagagggagggccccttgga
gagggagggacgctgctcggacccactgacctctcgcttccacccagtgattcctcccag
accaccacagagggaccagactcggctgtgaccccgtcagatgtagcggaactggtcctc
gacggcagtgaaagccagtactctgggatgcagataggaacactacaggatgaagaagat
gaaggagcagcaccttcctctcaagacaaaccctcagagcctttcctgcagtcggcactc
gctctgagcaagcctcatcttttcgacggacgaggccacaacaggcagggttcagacagc
agcgtggatcgcttcataccaaaggatgaaccagctgaacccgaacctgacagtaagcca
tcacgaataaagggcccgattggacactacacagaccaggacttggagccattagtgcac
tgtgttcggcttcttgcagcttcatttcttctgacggggcaaaaaaatgatccgatccca
gacaaagaggtgcgagtgagtgtgaaggccttggcggtcagctgcattggagcagcagca
gctctgcatcctgaagccttcttcaactccctctacctggaggcaccgaaaggtgttcca
gcagaagagagacaatatatcagcgatgttctctgcctcactgatcacggggatccgcag
atccggggggccacggccatcctctgtggagctattgtacaagcagcgctaaccaaaacg
cgtttcaacatacacacttggctggccggtgtgcagagtgcaacaggtaaccctctgtcc
ctggtggacttggtgcctttactacaaaaaactctcaaagatgattcgtccgtcacctgc
aagatggcttgttctgcagtcaggcactgcatcatgacgctgtgcagcagcacgctgagc
gagctcggccttcagttggtgatcgacctctttgccctccgagattgttcctactggctt
gttcgcactgagctcttggaaactttggctgatttagattttagattagtcaatttcttg
gagagaaaaactgacgctttacacaaaggagatcaccactacactggacaactgcggctg
caggaccgggttctgaatgatgtggttatacatctgctgggagatgacgatccaagagta
cgacacgtggcggcgtctgctgttagccgactagttccaagattgttctatgactgtgat
caaggccaagcggatccagtggtggcaataacccgggaccagagttcagtttaccttcag
ctgctcatgcacgagacacaacccccctcccagttcacagttagcaccatcacaaggacg
taccgaggctacaacctgtcgagctctgtgtctgacgtcacgttggaaaacaacttgtcc
agagttgtaactaaagtctcccacgctttcacctcctccacctctaaagcactaactttc
ggctgctgtgaggccttgtgcctcctggcatcaaactttccagttggcacttggagcaca
ggctggcactgtggctatgctagctctagtagcaacttctcttcccgttctagtctgaac
cgcagcagaggcagaaccctaagttcgtcacagacgagcaacactccagcctcttcaacc
acctcctcatctgcacccgactccgagcgacgcactctgactgtaggaactgccaacatg
gtgctctccttactctcctccgcctggtttcctctggatctctcagctcatcaagatgca
cttttgctttctggcaacctgcttgctgctgttgctcctaaatgtttgcgcaacccctgg
gctggcgaggacgagggcagtggtgggaccatcagtggaggtccaaataaaatggaggaa
ccctggccagcgctgtcagaacgctctttggtggtcatggtggagcagctgttctcccat
ctgctgaaggttctcaacatctgtgctcatgtgttggatgacgcagcaccaggaccagcg
atgaaggctgctcttccctctctcagtaacaccccctccctcagtcctatccgaaggaaa
ggcaaggagaaggaggctgctgagcccaacccttcccccatgagcccgaagaaaagcaac
gaggtcaacacaggcaggccagcagacggtgctggggggtcaacagcagttagcaaatct
accacccttggcaacttctaccacttgcctccctatcttaagctgtatgacgtgctcaaa
gccacccatgctaactacaaggtgacgttggatctccacagcagtcaggagaagtttgga
agtttcctgcgtgctgctctagatgttctgtctcagctgctggagttagcaacactgcat
gacattgggaagtgtgtagaagaaattctgggctatttgaagtcttgtttctcaagagaa
ccaaccatggctacagtttgtgtgcagcagttgttgaagaccctgtttggaaccaacctg
gcctcccagtatgaaggcgtcctgactggtcccagccgctcccagggcaaagctcttcgt
ctgggctcttccagcctgcgaccaggtctctaccactactgcttcatggctccgtacacg
cacttcacccaggctcttgctgatgctagtctgcgcaacatggtgcaggctgagcaagag
caggacacctctggatggtttgatgtgatgcagaaagcttccaatcagctgaggtccaac
atcgcaaatgctacacgccacagaggagacaagaatgccattcacaaccacatcaggctg
ttcgagcctctggtgatcaaagctctgaagcagtacaccaccagcacctccgtggccctg
cagagacaagtgctggacctgctcgctcagcttgtgcagctccgagtcaactactgcctg
ctggactcagatcaggtgttcataggctttgttctcaagcagtttgaatatatcgaagtg
ggacagttcagggattctgaagccatcattcccagcatatttttctttctggtgctgctg
tcttatgaacgctaccactccaagcagattatcagcattcccaagatcatccagctctgt
gacggcatcatggcgagcggcaggaaagctgtcacacatgccatcccggccttgcagccc
atcgtttatgacctgtttgtcctgaggggctcgaacaaagcggatgcaggcaaagagctg
gatacacaaaaagaagtggtggtgtccatgctgctcagactggtgcagtaccatcaggtg
ttggagatgttcatccttgttctacagcagtgtcacaaggaaaacgaggacaagtggaag
agactgtccagacaaatcgctgacgtcatactgccaatgattgcaaagcagcagatgctt
ctagactctccagaagcattaggagtgttgaacacgctgtttgagactgtggcgccctcg
tctctcagacctgtagacatgttgctcaagagcatgtttaccgtcccagccaccatggca
tctgtttccacagtccagctgtgggtgtctggcatcctggcagtccttagagttttagtg
tctcagtccactgaagacattgtcctgtcccgggtccacgagctgtcgctgtccccacac
ctcctgtcctgccatacgatctgccgcctgcatcagcacggcccctcgcccagtgacccg
tctgctgctgacgcagtgtctaaccaagaaaccaacggtgaagcccagaaggttccaccg
gaggaaacgtttgccaggttcctccttcagctggtcggcgtcttgcttgacgaactctcc
agcagacgtgctaaagtggacatcactgagcagcagcgcaccttctactgtcagcagctg
ggcacgctgctcatgtgtctcatccacgtgttcaagagcggaatgtttcgccggatcaca
gctgcagccactcgactcctgaaggatgaggatggtcggacgggcaccgaggccggtctc
ttctaccacttggagaggctgaacggcatggtgcagtctctggtcaccacccatccgtct
ctggtgctgctgtggtgtcaggttctcctcatcatcaactacaccaactattcctggtgg
gtcgaggtgcatcagacgcccagaggacacagcctctcgtccacgaagctgctgagtcct
cactcctcgggggagggtgaagaagaccagtcagcctcccagttagcgatggctaacaga
gagatcgtacgcagaggagccctaattctcttctgtgactacgtgtgtcagaatctccac
gactccgaacacctgacctggctgatcgtcaaccacgtgcgcgacctcatcagcctctct
cacgagcctccggttcaggacttcatcagcgctgttcaccgcaactctgctgccagcggc
ctcttcatccaggccatccagtctcgctgtgacaacctcaccactcccaccatgctgaag
aagacgttgcagtgtttggaaggcatccacctcagtcagtctgggtctttgctcatgctc
tacgtagacaaactgctcaacactcccttcagggtcttggctcggatggtggacacgctg
gcgtgtcgcagagtagagatgctgctggctgagactctgcagaacagtaaagcccagctg
cctgtggaggaactggaaaggattcaagaatacctccagaccagcggcttggctcaaagg
catcagaggttctactccctgctggacaggttcagagccacggttaccgacaccagcagc
cccccgcctcccgtgacctctcaccccttagatggaaacccaccacctgcccctgaaagt
gtcgccaccgacaaggaatggtacgtggcccttgtgaagtcccagtgcagtcttcttgga
gatgtgtccctgtcggagacaacagaacttctaactaaactacctcctgatgagctcttc
agtgtcatgcgcggcaaggatttcaacctacgtctgctctgtccgtgtctgagtatgggc
gtgcagaggtcagcaaggggtcaggggttactcttggtggaaacggcctggcaggtgacc
ctggagaaattatcagaggtgactgggtcacttcctgtcccacaccagtcttttctgcca
ccccctcaacctcagccttattggaaccagctggacgacgtgtttggtgggccgggtttc
taccccacggttttatcactgtgcagagcgttgtcgcagtatctgctgagcatcagtcag
ctgcctccatcacttcatctcccccctgacagggagcacctcatcaccacgttcacttgc
acagccacagaggtgatagtgtggcgcctgctccaggaccagctgcctctgagtgtggac
ctgcagtggtctctttcctgcttgtgtctggccctgcagcagccctgcatctggaacaag
ctctccacccccgagtacaacacacacacctgctccctcatcttctgcctgcgcctcata
attaccgcagtggctgtgagtcctggagaccggctgctgcatccagagaagaaaagacca
cgcggagaaaaaaccgctgaaggagaccaagtggacttggggaaccccgaatttaagtac
gaatgggaagcgtgtgagatcatggcggagctggtggagggaatgcagagcatcctttcc
ttaggtcacccaagaaactctgcgtttcctgcttttctcacgcaaacgttgcgcaacatt
gtcatcagtctgtccaggctgcctctggtcaacagctacaccagagtacctccactggtt
tggaaactgggctggtcccctcagccaggtggagactttggcacaacgctgcccgagatc
cctgttgactttctgcaggagaaggacgtcttcagagagtttctgtaccgcatcaacaca
ctaggctggagtaacaggactcagtttgaggaaacctgggccaccctgctgggggtgctg
gtcacccaaccaatcacaatggatcaggaggaggagactcatcaggaggaggacttggag
cgcacccagttaaacgtgctagcagtgcaggccatcaccagcctggtgctgagcgccatg
actctacccactgctggcaaccctgcggtcagctgtctggaacagcagcctcgcaacaag
agtctcaaagctctggaaacacggtttggacggaaacttgcagtgattagaggtgaagtg
gagagggagattcaggctctcgtgtcaaagagggacaatgtccatacacaccatccatac
cgtgcctgggaccctgtgccgtcactgtcagcagcctctgcagcagggacgctgatcagc
cacgagaagctgctgcttcagatcaacacggagagggagttgggcaacatggattacaaa
ctggggcaggtctccatccattccgtgtggttgggcaacaacatcactcctctaagagag
gaagagtggggtgaagatgaagaagatgaagcagacactccggctcctgcctccccacct
atatcgcctataaactccaggaaacaccgtgcgggcgtggacattcattcatgttctcag
tttctcctggagctctacagccagtggctcattccaggctctcccagtaacaggagaacc
ccgaccatcctcatcagtgaagtggttcgatcgctgctggcggtgtcggacctgttcaca
gagaggaaccagtttgacatgatgttctccaccctgatggagctccagaagcttcaccca
ccagaagatgagatcctcaatcagtacctggttcctgccttgtgtaaggctgctgctgtg
ctgggcatggacaaagtaacagccgagcctgtgtgtcgcctgttggagaccaccctgcgc
agcacccacctgcccagtcgcatgggagcgttgcacggtgtgctgtacgtgttggagtgc
gacttgctcgatgaaacagccaaacagctcatccctgcagtctcagagtaccttctgtcg
aacctcaaggggattgctcactgtgtgaacctgcacaaccagcagcatgtgctggtgatg
tgcgcggtggccttctacatgatggagaactaccctctggatgtaggagctgagtttatg
gctggggttatacaggtgtgtggggtgatggtgtctgccagcgaggactccaccccctcc
atcatctatcactgtgtgctgcgaggactggagcgccttctgctgtcagagcagttgtca
cgagtagacggcgaagctctggtcaaactcagcgtggaccgagtcaacatgccgtcacca
caccgagccatggctgccctgggcctgatgctcacctgcatgtacaccgcggttctcgca
tcaggttcaggtgcgtcaggggttagaggtcaggttgactctgctgtagcggaggcggtt
ggcgtcacagcgggtcatgttggtttctcctcaggcaaggagaaagccagccctgccagc
cgccctgcccaccctgacccacaagccccggacagcgagtccgtcatcgttgccatggag
agggtctccgtcctcttcgacagaatccggaaaggtttaccaagtgaggctcgagtggtg
tccaggattctgccccagtttctggacgacttcttcccaccgcaggacgtcatgaacaag
gtcatcggagagttcctgtccaaccagcagccgtacccacagttcatggccactgtggtc
tacaaggttttccagacgctccatgctacaggccagtcttcgatggtgcgagactcggt
DBGET
integrated database retrieval system
