Nematolebias whitei (Rio pearlfish): 119423253
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Entry
119423253 CDS
T08042
Symbol
rnf38
Name
(RefSeq) E3 ubiquitin-protein ligase RNF38
KO
K19041
E3 ubiquitin-protein ligase RNF38/44 [EC:
2.3.2.27
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nwh04121
]
119423253 (rnf38)
Enzymes [BR:
nwh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119423253 (rnf38)
Ubiquitin system [BR:
nwh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
119423253 (rnf38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-rbx1
zf-C3HC4_2
zf-C3HC4
zf-RING_5
zf-C3HC4_3
zf-ANAPC11
zf-RING_UBOX
VPS18_RING_C
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
119423253
NCBI-ProteinID:
XP_037546597
LinkDB
All DBs
Position
16:3341271..3369188
Genome browser
AA seq
717 aa
AA seq
DB search
MPIAATGQPSTREPRVCPRLPSTPEPVPKGADLFDEAGAAERSDYGGAEGGRGLGGYSGA
RSFAQPTTGSPPQSPAATSSFFLHLPHPHQVAMEPPRTRSRSRSGYYQQQFGVGNSGGGT
VSNPQQQQHGAGCAPLGAHGDLSENQQRPQGSTPPPGIQRFPSHPGVHHIPVAGASGGAY
HCHPDHAYGEESDKSEESPSPKRQRLSSQSVLEQLTSSAPPPSTPSPPIRPWESGPPSRR
QPHPHSHYHQERCLTPARLRRSPPARRQRGRLSRPARHLPPQHHTPAQGPTARLSPSELQ
DENFHRSSHLASHQTYPSHTPSGYGQPPAVGGGGSEELRAFHPPALSPQLLHPAAHHHPH
HHHPHQQQHHAAQQQQGAMVMDLHERLQQSSVPVSYTVTPVPPHGLPPPLCSGQHLPPSC
SSQPQVPACNVVFSTGQHYHPMLQACSMHHLPVPYAFPSLLSSDPQFLISPPPHLSHHTP
HLPAHAQFLPFQTQQARSPLQRIENEVDIVGEQLPVGGSFSYAHHHHHHHHHQPPSTLPP
STPLQFLSHHDPLSQELFTVPYPHFMPRRFTSRRYRSQQAVPPSPYHPSFLPYFLSMLPV
PPNVAPAISLELDVDDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQS
EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVQRDSE
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgccaatcgcagccaccggacaaccatcgacccgggagcccagagtttgcccccggctg
ccctccaccccggagcctgtccccaaaggggctgatttattcgacgaggcgggggcggcg
gagcgttcagactacggaggcgcggaggggggccgaggactcgggggctacagcggggcg
aggagctttgcacaaccgaccaccggctctccgccgcagtccccagccgcgacctcctcc
ttcttcctccacctccctcacccccaccaagtggccatggagccccccaggactcggtcg
cgctcccgctccggatactaccagcagcagttcggcgtcgggaacagcggcggagggacg
gtgtccaacccgcagcagcagcagcacggtgccggctgcgcaccgctcggagctcacggc
gacctctcggagaaccagcagcgaccacaagggagcacgcccccccccgggattcagagg
ttcccctctcatcccggagtccatcacatcccagtggcgggagcctcaggtggagcgtat
cactgccaccctgaccatgcatatggagaggagagcgataagagcgaggaaagccccagt
ccaaagcgccagaggctgtccagtcagtccgtcttagaacagctgacctcatctgcaccc
ccaccatccaccccttctcctcccatccgcccctgggagtcaggacccccgagtcgcaga
cagcctcaccctcactcacactaccaccaagagaggtgcctcactcctgcgcggctcaga
cgaagcccgccagcgaggcgtcagcgtggccgtctctccagacccgcccgtcacctgcct
ccgcagcaccacacccccgctcaaggccccacagctcgcttgtcgccgtctgaacttcag
gatgaaaacttccaccgcagctctcacctcgcctcgcatcagacatacccgtcacacact
ccaagcggttacggtcagcctcctgcagtcggcggtggcggttcagaggagctccgagcc
tttcaccccccagcgttgtcgcctcaactactgcacccagctgctcaccaccacccgcat
catcatcatcctcaccagcaacagcaccatgcggcgcaacagcagcaaggagccatggtc
atggacttgcacgagcggctgcagcagagcagcgtcccagtgtcctacacggtgactcca
gtccctccacacggcctcccaccgcctttgtgtagcggtcagcatcttcccccttcctgc
tcctcacagcctcaagtccccgcctgcaacgtggtcttcagcactggacaacactatcat
ccgatgttacaggcatgttccatgcaccatttgccagttccctacgccttcccgtctctg
ctgtccagcgaccctcagttcctgatatctcctccgcctcatctgtctcaccacacgccc
cacctcccagcgcatgcacagttcctgcctttccagactcaacaagcccgatcgccctta
cagaggattgaaaacgaggttgatattgtgggagaacagcttcctgttggtggaagcttc
agctacgctcatcaccatcaccaccaccatcaccaccagcctccctccacgctgccaccc
tctactccgctccagttcctgtcacaccatgaccccctgtcacaagagctctttacagtg
ccatatccccacttcatgcctcgtcgcttcacgagccgacgttaccgctcgcaacaagct
gtgcccccctctccctaccaccccagcttcctgccttacttcctgtctatgcttcctgtg
cccccaaatgtggctcctgccatcagtctagaactggatgtggatgatggagaggtggag
aactatgaggccctgttgaacctcgctgagcgcctaggagaggccaagccccgcggtcta
accaaggccgacatcgagcagcttccatcgtacaggttcaaccccaacaaccatcagtcg
gagcaaacactctgtgtggtgtgtatgtgcgactttgagtctcgccagctcctcagggtt
ctgccctgtaatcacgagttccatgccaagtgtgtagacaagtggctgaaggctaaccgg
acctgcccgatctgtcgagctgatgcctctgaggtccagcgggactcagagtga
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