Nematolebias whitei (Rio pearlfish): 119423331
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Entry
119423331 CDS
T08042
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nwh03016
]
119423331 (trub1)
Enzymes [BR:
nwh01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
119423331 (trub1)
Transfer RNA biogenesis [BR:
nwh03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
119423331 (trub1)
Prokaryotic type
119423331 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
GAIN_A
Pus10_C
Motif
Other DBs
NCBI-GeneID:
119423331
NCBI-ProteinID:
XP_037546635
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All DBs
Position
17:3671727..3692507
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AA seq
278 aa
AA seq
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MAGSVSSTAAPITSSLSKLQALNGLFAIYKKQGPTSADVLNTLKEALLKEAGVKTSNPRK
RKNQQLKLGHGGTLDSAASGVLVVGVGNGTKMLSKMLAGSKKYVAVGELGTATDTLDATG
SVILEKGFEHITRLDMEDKLKSFTGEIMQVPPLYSALKKDGQRLSVLLKQGHKVEAKPAR
PVTVYSLTLQEFRSPLFTLDIECGGGFYVRSLVDDLGKALSSCAHVKELIRTKQGPFTLQ
DHVLREEQWTLENILQSLQPCSEGDQILDPPKLAETNT
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atggctggaagtgtgagcagcactgctgcccccataacaagctccctgtccaaactgcag
gctttgaatggattgtttgcgatttataaaaaacaaggaccgacgtctgctgacgtgttg
aacacgctcaaagaagccttactcaaagaagcgggagttaagacgagcaaccctcggaag
aggaagaaccagcagctgaaactgggtcacggagggacgttagacagcgctgccagcggg
gtgttggttgtcggtgttggaaatggaactaaaatgctcagcaaaatgttggctgggtca
aagaaatatgttgctgtaggagaactgggaacagctacagacactctagatgccacaggg
tcagtgattttagagaaaggctttgaacacataaccaggctagacatggaggacaaactg
aaatcttttactggtgaaatcatgcaggttcctccactctactctgcactgaaaaaagac
ggtcagcgcctctctgtcttgttaaagcaaggtcacaaggttgaggccaagcctgcaagg
cctgttactgtgtacagcctgaccctgcaggagttcagatctcctctcttcactctggat
attgagtgtggcggtggattttatgtcagaagtttggtggatgacctgggaaaagctttg
tcatcatgtgctcatgtgaaggagctgatcagaacaaagcagggtccgttcaccctgcag
gatcacgtcttacgagaggagcagtggaccctggaaaatatccttcagtctctgcagccc
tgctcagaaggagaccagatcctggaccctccaaaactagcagaaactaacacctaa
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