Nematolebias whitei (Rio pearlfish): 119423386
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Entry
119423386 CDS
T08042
Symbol
pms2
Name
(RefSeq) mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03430
Mismatch repair
nwh03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
119423386 (pms2)
03460 Fanconi anemia pathway
119423386 (pms2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nwh03400
]
119423386 (pms2)
DNA repair and recombination proteins [BR:
nwh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
119423386 (pms2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
119423386
NCBI-ProteinID:
XP_037546699
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Position
17:complement(20946697..20957073)
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AA seq
843 aa
AA seq
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MSDICTSEPAGAIRAIDKHSVHQICSGQVVLTLATAVKELVENSIDAGASSIDVKLKECG
VEQIEVSDNGKGVEEANFEGLTLKHHTSKLRDFSDLIHVETFGFRGEALSSLCALSDLSV
ITCHESSQVGTKLAFNQKGHLVHKSPHPRQQGTTVTLQQLFYTLPVRHKEFQRNIKKEYS
KMVHVLQAYCIISTGVRITCSNQNGQGRRSTVLSTGGSQSVRDNIGAIFGPKQLQSLLPF
QQVSPTENIVEEFGLKDADLPKQLFSITGFVSRGDHGVGRSATDRQFYFINNRPCDPLKV
TKLVNEVYHVYNRHQYPFVALNIVVASECVDVNVTPDKRQVFLQEEKLLLAILKTSLISM
YEAGVNKISLNCTSIASSASEEVIFSKENKAEPAEEAQTASQSPKSSLNLAALKAAFSNH
TSTSSGNKSGKEKTPSCGPTQKTLQCFFKDSAKPACSQSMKTPLKPARDKSNFLPAGRSV
LDGFRYAGCEKDSKGDGAVSSHDFTASAPDVHHSDPERNSVEEESLVSAAYSRRRAPEDP
ELQTEAAEDSTLSPEAKRARTEDLRVTAEQTSDASSNVDTSSPVVDVLVRLQRRTRQVRL
SLKELSANLRKLQEQQKRRSSEELQYRRFRAKISPGENQSAEDELKKEISKEMFKEMEII
GQFNLGFIITKSNWDIFIIDQHATDEKFNFEMLQQHTALQGQKLIAPKKLHLTAVSENTL
MENMEIFQKNGFEFLIDEDAQVMERVKLVSLPTSKNWTFGPADIEELIFMLTDSPGVMCR
PSRVRQMFASRACRKSVMVGTALSVSEMKKLVVHMGEIEHPWNCPHGRPTMRHLVNLDMI
SQN
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatatttgcacatccgaaccagctggagccatcagggctatagacaagcactct
gtgcatcagatctgctcaggacaagtggttctgactttggctactgcagtcaaagagctg
gtggagaacagcattgatgctggagccagcagcattgatgtcaagctgaaggagtgcggc
gttgaacaaatagaagtgtccgacaatggcaaaggtgttgaagaggctaactttgaagga
ctcacactgaagcatcacacgtcaaagctgagggatttctccgatctcatccacgtggaa
acatttggctttcgaggtgaagccctcagctctttatgtgctttgagtgacctgagtgtg
attacatgccacgagtcgagtcaggtgggcaccaagctggcgtttaaccaaaaaggccac
ctcgtgcacaagtcccctcatcctaggcagcagggcaccacagtcaccctgcagcagctc
ttctacacgttgcccgttagacacaaggagttccagcgcaatattaagaaggagtattct
aagatggtacatgtcctgcaggcgtactgcatcatctctactggagtacgaatcacctgc
tccaaccagaatgggcaggggaggcgcagcaccgtcctcagcaccggcggcagccaaagc
gtcagagacaacattggagccatatttggaccaaaacagcttcagagtcttctacctttt
cagcaagtgtctccgacagagaatattgttgaagaatttggactcaaggatgcagatctg
cccaaacagctgttttcaatcacagggtttgtgtcgaggggtgaccacggagtcggacga
agtgccacagacaggcagttctacttcatcaacaacaggccttgtgaccccctaaaggtc
accaaacttgtgaatgaagtttatcacgtgtacaacaggcaccagtatccgtttgttgcc
ttaaacatagttgttgcctcagagtgtgtggatgtgaatgtaactccagacaaacggcag
gttttcctccaagaggagaagctcctgctggctattttaaagacctccctcatctccatg
tatgaagctggagtcaataaaatcagcctgaactgcacatccattgcatcgtctgcgtct
gaagaagtcatcttctctaaagagaacaaggcagaacctgcagaggaggctcaaacagcg
agccagagcccaaagtcatccttgaacctggccgccctcaaagctgctttttcaaaccac
accagcaccagttctgggaacaagtcgggcaaggagaagactcccagctgtggcccaacc
cagaaaacactgcagtgtttcttcaaggattctgcaaaacctgcttgcagccaaagcatg
aagactcctttaaaacccgcacgagataaatctaatttcttgccagctggaaggtccgtg
ctggatgggtttaggtatgcagggtgcgagaaggactctaaaggagacggtgctgtgtcc
agtcatgacttcacagcatcagcaccagatgtgcaccattctgacccagagcgtaactct
gtagaagaggagtcgcttgtttcagcagcgtatagtcgtcgtcgtgctcctgaggatcca
gaacttcagactgaagctgctgaggactccacactaagccccgaggccaaaagagccagg
acagaggacctgcgtgtcactgcagaacaaacgtctgacgcttcttcaaacgttgatacc
tcttccccggtggtggacgtccttgtccgcctgcagaggaggacgaggcaggtacggctc
tccctgaaggagctgtcagcgaacctgaggaagctgcaggagcagcagaaacggaggtcc
agtgaggagctgcaatacagacgcttcagggccaagatcagccccggagaaaaccaaagt
gcagaggacgagctcaagaaagagatcagcaaagaaatgtttaaagaaatggagatcatc
ggtcagtttaacttgggcttcatcattaccaaatcgaactgggacatcttcatcattgac
cagcatgccacagatgagaagttcaactttgagatgctgcagcagcacactgcgctccag
ggacagaaacttattgccccaaagaaactccacctcactgcagtcagcgagaacacactg
atggaaaacatggagattttccaaaagaacggctttgagtttctgattgatgaagatgct
caggtgatggagagggttaagctggtttccttgcccaccagtaagaactggaccttcggc
cctgctgacatcgaagagctgatcttcatgctgactgacagcccaggtgtcatgtgccgc
ccctccagagtcagacagatgttcgcctccagagcctgtcgcaaatcagtgatggttggc
accgcgctgagtgtcagtgagatgaagaagcttgtggttcacatgggggagatcgaacac
ccgtggaactgtccccacggcagacctactatgagacacctggtcaacctggacatgata
tcacaaaactga
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