Nematolebias whitei (Rio pearlfish): 119423730
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Entry
119423730 CDS
T08042
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
119423730 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nwh03400
]
119423730 (msh2)
DNA repair and recombination proteins [BR:
nwh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
119423730 (msh2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
119423730
NCBI-ProteinID:
XP_037547066
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Position
17:complement(33141088..33152372)
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AA seq
935 aa
AA seq
DB search
MAVQPKQNMSMDSAAEHGFLNFIFSMPEKPDTTLRIFDRNDYYTVHGKDAIFAAKEVFKT
NGVIKYLGSGSRKLESVILSKLNFEAFVKDLLLVRQYRVEVYRNHSKSSKEHDWRIEYKA
SPGNLTQFEEILFGGGTGAEGCAGVVAVRFATGADGQRVVGVGYVDAAQRKMGVCEFPDN
EIFSNLESLLVQISPKECLLAQGESSADGNKLREVVQRGGMLVSDRKKAEFSSKDIVQDL
NRLLRSKRGETVVSNTLPELDKQVAMSCLAAVVRFLELLSDESNFNSFSLTTLELGQYMR
LDHAAVRALNLFQGSPDDASGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEERLD
LVESFVCDAELRQTCQEDLLRRFPDLHRLAKKFHRHTATLQDCYRVYQAVSQLPTLITAL
ERYSGSYQVLLQAAFTSPLRDLQKDFTKYQEMIETTLDMNQIEHHEFLVKASFDPVLSEL
REKMDALEQSMQTVLSGAARELGLEAGKTVKLESNAVLGFYLRVTCKEEKSLRNNKKFTT
LDVQKNGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEIISIASGYVDPLQTLNDVVAQ
LDAVASFAVASVSAPIPYVRPRVLDGGCRRLELLQARHPCMETDADTAFIPNDITFVQGE
NSFYIITGPNMGGKSTFIRQVGLIALMAQIGCFVPCEKAELSVTDSVLARVGAGDSQVKG
VSTFMSEMLETAAILRSATESSLIIIDELGRGTSTYDGFGLAWAISEHIAAKIGCFCLFA
THFHELTALAAQQPTVHNLHVTALTSHNTLTMLYRVRPGVCDQSFGIHVAELACFPASVL
AVAKEKAEELEEFQEPAGDHLKREDEPEAKRRRMDKQAGENLIQDFLQKVKSLPVATMTE
EEVKEELRRMKQELITKNNPYVRELLARCVPVKTA
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaagcagaacatgtccatggacagtgcggccgagcacggcttttta
aacttcattttctccatgccggagaaaccggacacgactttgagaatatttgaccgaaac
gactattacaccgttcacgggaaggacgccatatttgctgccaaggaggtttttaagacg
aatggggtcatcaagtatttgggttcaggaagtcgcaagctggagagtgtgatcctgagc
aagctgaactttgaagcctttgtgaaggacttgttgttggtgaggcagtacagagtggag
gtgtacaggaaccacagcaagagcagcaaagagcacgactggaggattgagtacaaggcg
tctccgggaaacttgactcagtttgaggagattctgtttggcggtggaaccggagcggag
ggctgcgcgggggtcgttgcggtgcgatttgcgacaggagccgacgggcagcgtgtggtt
ggggtcggctacgtggacgctgcccagaggaaaatgggagtgtgtgagtttccagacaat
gagatcttctccaacctggagtccctgcttgtccagatcagccccaaagagtgtctccta
gctcagggtgaatccagcgctgatgggaacaaactacgggaggtggtacagcgtggcggc
atgctggtttctgacagaaagaaagcagagttcagcagcaaggacatcgttcaggatctc
aacaggctgctgagatctaagagaggggagacggtagtgagcaacacactacctgaactg
gacaagcaggtggccatgtcttgtttggctgctgtggtgcgtttcctcgagctgctttct
gacgagtccaactttaactcctttagtctcaccactctggagcttggtcagtacatgagg
ctggaccacgccgccgtcagggctcttaacctcttccagggttcacctgacgacgccagc
ggcgctcactcgttggccggtttgctgaacaagtgccgaactccgcagggtcagaggctg
gtcaaccagtggatcaaacagccactcatggacaaaaccaaaatagaagaaaggctggac
ctcgtggagagcttcgtgtgcgacgccgagctcaggcagacttgtcaggaggatttgctg
cgccgctttcccgatcttcaccgcctggccaaaaagtttcaccgacacactgcaactctg
caggactgctaccgcgtctaccaggctgtgagccagctccccaccctcatcacagccctg
gagagatactcaggcagctaccaggtgctgctgcaggcagcgttcacctctcctctccga
gacctgcagaaagatttcacaaagtaccaggagatgatcgaaaccacgctggacatgaac
cagattgaacaccacgagttcctggtgaaggcatcgttcgatccggttctgagcgagctg
agagaaaagatggacgcgctggaacaaagcatgcagactgtgctgagcggtgcagccaga
gaattaggcctggaagctggtaagacggtgaagctggagtccaacgccgtgctggggttc
tacctgagagtcacatgcaaagaggagaagagtctgaggaacaataagaagttcaccaca
ctggacgtgcagaagaacggcgtgcgcttcacaaacagcaagctgagctctctgaacgag
gagtacaccaagagcagggaggagtacgaagaggcccagaacgccatcgtcaaggagatc
atcagcatcgcctcagggtatgtggatcccctccagacgctaaatgacgttgtagcgcag
ctggacgcagtggcgagttttgccgtggcgtccgtttccgcccccatcccgtacgttcga
ccccgagtcttagatggcggctgcaggcgtctggagctgctgcaggccagacacccctgc
atggagacggacgcagacaccgccttcatacctaacgatatcacctttgtccagggcgag
aacagcttctacattataacaggaccaaatatgggcggaaagtcgacgtttatccggcag
gtgggtttgatcgctttgatggcgcagatcggctgctttgtgccatgtgagaaggcggag
cttagtgtgacggacagcgtcctggctcgagtgggagctggagacagccaggtaaaaggg
gtgtccacttttatgtccgagatgttggagaccgctgccatcctgcgctcggccacggag
agctcgctcatcatcatcgacgagctcggcagagggacgtccacgtacgacggcttcggg
ctggcctgggccatcagcgaacacatcgccgccaagatcggctgcttctgcctcttcgcc
acgcacttccacgagctgacggctctggcggcgcagcagcccaccgtgcacaacctgcac
gtcaccgccctgacgtcacacaacacactcacgatgctgtacagggtcagaccaggtgtg
tgcgaccagagttttggaatccacgtcgctgagttggcgtgcttccctgcgtcggtgctg
gcggtggcaaaggagaaggcggaggagctggaggagttccaggagcccgcaggagatcat
ctgaagcgggaggacgagccagaggccaagagacggcggatggacaaacaagcgggagaa
aacctgatccaggactttctgcaaaaggtgaaatctctccctgttgccaccatgaccgag
gaggaggtgaaggaggagctcaggaggatgaagcaggagttgatcaccaaaaataacccg
tacgtccgtgagctcctcgctcgctgtgttccagtgaaaactgcgtaa
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