Nematolebias whitei (Rio pearlfish): 119423945
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Entry
119423945 CDS
T08042
Symbol
ift140
Name
(RefSeq) intraflagellar transport protein 140 homolog
KO
K19672
intraflagellar transport protein 140
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
nwh03037
]
119423945 (ift140)
Cilium and associated proteins [BR:
nwh03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex A
119423945 (ift140)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_IF140-IFT172
Beta-prop_IFT140_1st
Beta-prop_IFT140_2nd
TPR_IF140_C
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
WDR55
TPR_IFT80_172
TPR_GEMI5
WD40_Prp19
Beta-prop_EML
Beta-prop_WDR35_TULP_N
TPR_COPA_B
Beta-prop_ELP1_2nd
Beta-prop_CAF1B_HIR1
Clathrin
RNase_HII
Consortin_N
Motif
Other DBs
NCBI-GeneID:
119423945
NCBI-ProteinID:
XP_037547305
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All DBs
Position
17:23493374..23520871
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AA seq
1457 aa
AA seq
DB search
MAVYFDHRIAAPENSDVPSHLTWHSTFPVLAVASSSPSCGGSVDLYLQQGEHVESCHVER
PYQPTVLRWHPLKPVLALGWENGEVVLLIQTSGDQIVLPSSHTACITLLEWSTSGSRLVT
GDQTGALAVWKFDARGRPMGNPLVRHEYNKPLTCCIFRPASPGDDVAKLARASVSGDESA
LDMFSWKGAPLKMGPQEGLAFYVSTADGKVHVVDEHCKTSTLLIVEGSIKKLFYFEKREM
FAVITETLMLSQYKLRPEGGAQEFMKVKLSSKAGQNTDIIWTENSLLITATGEQIVRLSD
LERDDNYVLSLDETLGFEKGEIINCVSYCAAKEILAAGTSNGRIAMWKMVMQPSSRRLDT
KVLWKLQTPTEIDGNVTQLQWGSSQNLLAANNSKTVLILCEHSMSAHYSQQVAAVQLTPT
QLSITHFTTGVHLALQSDMHIKGVCVSKDSVTIWNGKQVNVYELSETVLRSTGSFSCDSQ
VVAVHDENLYTVEPNRVQIRTPQGTVKQLLTFSKAEGNPVLLNVCQSYLVVGTDTAHIRV
FDLSRRDAKAHCSAKNLADQIANMGALKSVKCNASGSQVSILISQVNGRPDHKVYFYDVE
MDTVTHFDFFTGRPSSGVFQPEESYKQKFQETEFRERCPVSHYWDESEPRLFVCETVPIS
SETSSRNHLDVVDVSVVTLFCTQDHGLLLQDCFPKPSSLQALLALDVPYYYFSCKLLFRK
DDIFRPEPGEGDPGPTKASSPSHPIQSTTDAAAQFSRMVSRRSLRDFVELENCDKATRDA
MLNFSFYLTIGDMDEAYKSIKHIKSKAVWENMARMCVKYRWLDVARVCLGNMGNARAAKA
VKEAEAEPEPEARVAVLAVQLNMLEDAEKLYKSCQRYDLLNNFYQASGQWQQALQMAETH
DRIHLRTTYYNYARHLESMGDKILALTYYEKSDTHRVEVPRMLQDDTSSLEVYVNKMKDK
NIYKWWAQYLESQSDMETALQFYERAQDYLSLVRVHCYMGKIQEASQIANKTGDRAASYH
LARHYEGHDDIKQAVHFYTRAQAYNNAIRLCKENGLDDQLMNLALLSNPEDMMEAACYYE
EKGTHMDRAVALYHKAGYVSKALELAFATEQFSALQLIAEDLNENCDPALLSRCSEFFIK
HSQYEKAVELLVAAKKYFQALELCLIQNLTITEDLAESLTVTDSKDLPEEARKELLEKIA
DCCMRQGNYHLATKKYAQAGNKLKAMRALLKSGDTEKIVFFANVSRQKELFIMAANYLQS
LDWRKNPEILKTIISFYTKGKAPELLAGFYEVCAQVEIDEYQDYEKALDALMEAFKCLSK
AKDTSGGQREVRLADLQHKISLIKKFVHIRRLYSENADEAVQLCEALLEEPEMDPAVRIG
DAFGFIVEHHCHQGNFQMAYQKLEELQKLLPSQNVRYYISQPSLDALHKELGVALAQGEH
RRSLKEDDEVEEELNMS
NT seq
4374 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgtattttgaccaccgtattgcggcccctgaaaacagtgacgtgccctctcac
ctcacatggcactcgacttttccggtactggctgtggcctcaagcagcccttcttgcgga
ggcagtgtagacctctacctacaacagggagagcatgttgagagctgccatgtagaacga
ccctaccagcccactgtgcttcgttggcatcccttaaagccagttctggctctgggatgg
gagaatggagaggtagtgttgctgatacagacctctggagatcaaatagtcttgcccagt
tctcacacagcctgcatcacactgttggagtggagtacgtcaggcagccgtttagtaact
ggtgaccagaccggcgctttagcagtatggaagttcgatgccagagggagacctatggga
aatcctctagttaggcatgaatacaacaaacctttaacttgttgcatcttcagacctgcc
tctcctggagatgatgtggcaaagttagctcgggcttctgtgagtggagatgagagcgcg
ctggacatgttcagttggaagggagcacctctaaagatgggccctcaggagggacttgca
ttctatgtcagcactgccgacggaaaggtccatgttgttgatgagcattgtaagacgagc
acacttcttattgtggagggctccatcaagaaacttttctattttgaaaaaagggagatg
ttcgctgtgatcacagagacccttatgttgtcacaatacaagctgaggcctgagggtgga
gcacaggaatttatgaaggtgaagttgagcagcaaggctggacaaaacactgacattatt
tggacagagaacagcctccttataacggcaacaggggaacaaatagtcaggctgtcggac
ctggagagagatgacaattatgttttatctctcgacgagacattggggtttgagaaagga
gaaattataaattgtgtttcatactgtgcagcaaaagaaatcctggcggccggtacttcc
aatgggcgcatagcaatgtggaagatggtgatgcagccaagcagcagaagattagacacc
aaggtcctgtggaaattacaaacacccacagaaatagatggaaatgtcactcagctacag
tggggctccagccagaatctgctggcagcaaacaattcaaagacggtgctgattctctgc
gagcacagcatgtcagcccactacagccaacaggtggcagcagtgcagctcaccccgaca
cagctcagcatcactcatttcaccacaggagtgcaccttgctctgcagtctgacatgcac
atcaaaggagtgtgtgttagcaaggactctgtgaccatctggaatggtaaacaagtcaac
gtatatgagctctcagagacagttttacgcagcacaggatcattttcttgtgattcccag
gtggtagctgtacatgatgagaacctctacaccgtggaaccaaacagggtacaaatccga
acgccacagggcacagtaaagcaacttttaactttctccaaggcagagggaaaccctgtg
ctactcaatgtgtgccagtcttacctggtggtaggtacagacacagcacacatcagagtt
tttgacctctctagaagggatgccaaagctcactgcagtgctaaaaacttggcagaccag
attgccaatatgggtgctctgaagtctgtcaaatgcaatgccagtggtagccaagttagc
atcctgatctctcaggtaaatggacgaccggatcacaaagtgtacttttacgatgttgag
atggacactgttactcactttgacttcttcactgggaggccatccagtggtgtctttcag
cccgaagaaagttataagcagaagtttcaggagactgaattcagggaacgctgtcctgtg
tctcactactgggacgaaagcgaacctcgcctttttgtttgtgagacggtgccaatcagc
tctgaaacctcatcaaggaatcacttagatgtggtggatgtatcagtagtgacactcttc
tgtacacaagaccatggactcctcctacaagactgtttcccaaaaccttctagcctgcag
gccctactcgctctggacgtgccctactattattttagctgtaagctactgtttcggaaa
gatgatatcttccgaccggaaccaggtgaaggggacccaggcccaacaaaggcttcatca
ccttcacatccgattcagtcaacaacagatgctgctgcccagttctcccgtatggtttcc
aggcgatctcttagagactttgtcgagctggaaaactgtgacaaggccactcgtgatgcc
atgctgaacttcagcttctacctgactattggcgacatggatgaagcctataagtctatc
aagcacatcaagagtaaagcagtatgggaaaacatggcacggatgtgtgtgaaataccgc
tggctggacgtagcacgagtgtgcctggggaatatggggaatgccagagcagcaaaagcg
gtaaaggaggcggaggccgagcctgaacctgaagcccgagtggcggtgttagccgttcag
ctcaacatgctagaagatgcagaaaagttgtacaagagctgtcaacgctatgacctgctg
aacaatttctaccaggcctctggccagtggcagcaagctttgcagatggctgaaactcac
gatcgtatccatctgcgcacgacttactacaattacgcccgacacctggagtccatgggc
gacaagatactggcacttacttattatgagaaatcagacacacacagggttgaagtgccc
agaatgcttcaggatgacacatcgtctttagaagtttatgtcaacaaaatgaaagataag
aacatctataagtggtgggcccagtacctggagagccagtcggacatggagacggcgctg
cagttctatgagcgtgctcaggattacctctctctggtccgagtccactgctacatgggg
aaaattcaagaggcctctcagatagccaataaaacaggtgacagagcagcttcgtaccac
ctagccagacattatgagggtcatgatgatatcaagcaagcagttcacttctacacacga
gcccaggcctacaacaacgctatacggctctgcaaggaaaacggtctggatgaccagctg
atgaacctggctctgctcagtaacccagaggacatgatggaagctgcctgttactacgag
gagaaaggcacgcacatggaccgagctgtcgcactttatcacaaggctggttatgtctcc
aaagctctggagctggccttcgccactgaacagttctctgctcttcaactcatcgcagag
gatctgaatgaaaactgtgaccctgcactcctctctcgctgctctgagttcttcatcaaa
cattcccagtatgaaaaagcagtggagttactggttgcagccaagaagtactttcaggct
ctggagctgtgtttgatccaaaacctgacgatcactgaggatctggctgagagcctgacg
gtaactgactcgaaggacctgcctgaggaggcccgcaaggaactgctggagaagatcgct
gactgctgcatgcgtcagggcaactaccacctggcaacaaagaaatacgcacaggctggc
aacaaactcaaggcgatgagggcactcctgaagtccggcgacacggagaagatcgttttc
tttgccaacgtttcccgccagaaagaacttttcatcatggctgccaattatctccagtct
ctagactggcgtaaaaacccggagatccttaagacaataattagtttctacactaaaggc
aaagctccagagctgctcgctggcttttatgaagtttgtgcacaggtggaaatagatgaa
taccaagattatgaaaaggctctcgatgctctcatggaggcttttaagtgtctgtccaaa
gcaaaggacacttcaggtggacaacgggaagtgagactagctgaccttcagcataaaatc
agcctaatcaagaagtttgtccacatacgcaggttgtattcagagaatgcggatgaggcg
gtgcagttatgtgaagctctcctggaggaaccagagatggatcctgctgtcaggattgga
gatgcatttggttttattgtggagcaccactgtcatcaagggaacttccaaatggcctat
caaaagttggaggagctccagaagctgctgccgtcgcagaacgtgagatattacatcagc
cagcccagcctggacgccctgcacaaagagctgggtgtagctctggctcagggcgagcac
agacgcagcctgaaggaggacgacgaagtggaggaggaattaaatatgtcttaa
DBGET
integrated database retrieval system
