Nematolebias whitei (Rio pearlfish): 119424240
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Entry
119424240 CDS
T08042
Name
(RefSeq) paired amphipathic helix protein Sin3a
KO
K11644
paired amphipathic helix protein Sin3a
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
119424240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nwh03036
]
119424240
Chromosome and associated proteins [BR:
nwh03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
119424240
REST complex
119424240
Heterochromatin formation proteins
Other heterochromatin formation proteins
119424240
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
119424240
NCBI-ProteinID:
XP_037547654
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All DBs
Position
2:complement(39375839..39392715)
Genome browser
AA seq
1287 aa
AA seq
DB search
MKKRAEDQEPIFAPQQQQPRRPPVQGIAESFQHRALAPAPAAVEAPAENMQPSTGIQYSL
PQGYQVPAMPQSTSGHGHNTSTPHISPHAHSLTVQSQTPAAVQGHVHPPAPMASTQGQQF
QRLKVEDALSYLDQVKLQFGNQPQVYNDFLDIMKEFKSQSIDTPGVINRVSQLFKGHPDL
IMGFNTFLPPGYKIEVQTNDLVNVTTPGQIHYITPHGVSVHNIPASGASSQPPINHQHQS
LPQTGLSTTSTPPLATQPTVNKTSKPIQSPAHTPTSQPNPSIPAYASPRSPSVQPHTPVN
STPSSGPPLQNNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGG
NYTPALTEQEVYTQVARLFKNQEDLLSEFGQFLPDANNSLLLGKAIPDRAESVRNDHGPT
VKRPSLNNKQRLNQNGLPVRRPSGVGATPPPKKKSLVMGKGHGLTEASKLSTSTETMFFE
KVKKALRSAEAYDNFLRCLHIFNQEVISRTELVQLVIPFLGKFPELFTWFKNFLGYRESS
HGDSSHAESLPKERSTEGIAMEIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCREVLND
TWVSFPSWSEDSTFVSSKKTQYEEHIYRCEDERFELDIVLETNLATIRALETVQRRLSRM
SAEEQVRFRLDNTIGGSSDVIHRKAIQRIYGDKAPDIIDGLKRNPAVSVPIVLKRLKTKD
DEWKEAQRGFNKIWQEQNEKYYLKSLDHQGINFKQNDTKVLRSKTLLNEIEMLYEDRQEQ
ASEENATPPPSAPHMTLTYDDSQILEDAAGLIIHHVKRQVGIQKEDKFKIKQIIHHFIPD
LLFAQRSELSDLEEEEEEEEDDEDVETNQDSPKKHNGLPGRSPSKSKLLFSSTAAQKLRG
TDDVYNLFFVNNYWYVFFRLHYILCSRLLRIYGQAEKQIEEDAHEREWESEMLGLKKEKN
ENPAIQLKMKEPMEVDVDEYYSVFLEMVRNLLDGNMEPAQYEDSLREMFTIHAYIAFTLD
KLIQSIVRQLQHLVTDDVCARVTDMYLSESANKATGGTVSTQTSRAAAEGTYQHRAEQLM
SDENCFKLMFMKNRGSVSLALELLDTEEENSDEPADAEKWSDYVSRYSTSPELREHLAQK
PVFLPRNLRRIRKCQRGWEQLQQERITKGSSDKPQDSNSDLKMKCMFKLNSYKMVYVCKS
EDYMYRHTALTRANQSHQRVHTRLHKRFHTWLDNWAKTHVTSEMSANTQKWLRGEGQEGL
LSCTTTCCPQVLHYLNITKYRVKYRTL
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaacgtgcagaagaccaagagccgatatttgcaccccaacaacagcagccacgt
cgccccccagttcagggcattgcagaaagctttcagcaccgggcccttgcccctgctcca
gctgcagtggaggcacctgcagaaaacatgcagccttcaaccggcatccagtattccctc
ccacagggctatcaggtgcctgcgatgcctcaaagcacaagtggacatggacacaacact
tctacacctcatattagtcctcatgcacacagcctgacagttcagtcacagacccctgct
gctgtccaaggtcatgttcatccacctgcacctatggcttcaacccaagggcagcagttt
caacgattaaaggttgaagatgctctctcttatttggatcaagtgaaactgcagtttggg
aatcagccacaagtttataacgatttccttgatattatgaaggagtttaaatcacaaagc
atagacactcctggagtcatcaatcgtgtgtcacagctctttaagggccaccctgacctc
atcatgggtttcaacactttcttgccaccggggtataagattgaagttcaaaccaacgat
ctagtcaacgttaccacaccagggcagatccactacatcacccctcatggtgtttctgta
cataacatccctgcaagtggtgcatccagccaaccccccatcaatcaccagcaccaaagt
ctgccacagactggactgagcactaccagtaccccaccacttgctactcagcctactgtc
aacaaaaccagcaagccaattcagtctccggcccatacacccaccagccagcccaatcca
tccatcccagcttatgcctcaccacgttcaccttcagttcagccccacactcctgtcaac
agcacgccatccagtggtccacctctccagaacaaccaaccggtggagtttaaccacgcc
ataaattatgtcaacaagatcaagaatcgctttcagggccagccagacatttacaaagcc
tttctggaaatcttacacacttaccagaaggaacagcggaatgctaaagaggctggtggt
aattacaccccggcactgactgagcaggaggtctacactcaagtggcaagacttttcaaa
aaccaggaggacttgctctcagagtttggacagttcctgccagatgcaaacaactcattg
cttttgggtaaggctatacctgacagagctgagtccgtccgtaatgatcatggtcccact
gtgaagagaccgtccctgaacaacaaacagaggctgaatcagaatggcctgccagtcagg
aggccttctggagtgggtgccacccctccaccaaagaagaaatctttagtaatgggaaaa
ggccacggtttgactgaagccagtaaactcagcacaagcactgaaactatgttctttgag
aaggtgaaaaaggctctgcgcagcgctgaagcctatgacaacttcctgcggtgtctgcac
atcttcaaccaggaagtgatttctcgcactgagctggtccagttagtcatcccatttctt
ggaaaattcccagagctttttacgtggtttaagaacttcctggggtaccgagagtccagt
catggagactcgagccatgcagagagtttacccaaggagcgctccacagagggtattgcc
atggagatcgactatgcctcctgcaagaggctggggtccagctacagagcactgccgaag
agctaccagcagcccaagtgcacaggaagaacaccgctgtgcagagaggtcttgaatgac
acttgggtttcatttccatcttggtctgaggactctacatttgtgagctctaaaaagact
cagtatgaggagcatatttacagatgtgaggatgagcgctttgagcttgatattgtgttg
gagaccaaccttgctacaatacgagctctggagactgtgcaaaggaggctttctcgcatg
tctgctgaggagcaggtgcgcttcaggctggacaacacaatcggtggctcttcggatgtc
attcaccgtaaagccattcagaggatatatggagacaaggctcctgacattattgacggg
ctcaagagaaaccctgccgtgtctgtgcccatagttctgaaaagattaaaaacaaaggat
gatgagtggaaagaagcacagaggggcttcaacaaaatctggcaggaacagaatgaaaag
tattacctgaagtcgctcgaccaccaaggcataaacttcaagcagaatgacaccaaagtg
ttgcgctccaagactttgctcaacgaaattgagatgttgtatgaagatcgccaggaacaa
gcctcggaggaaaatgccactccgccaccaagcgccccccacatgaccctgacctacgat
gacagccagatcttggaggatgctgctggcctcatcatccatcatgtcaaaagacaagtc
ggcatccagaaggaggacaagttcaagatcaaacagataatccaccatttcattcctgac
cttctgtttgcacaacgcagcgagctctctgacttggaggaagaggaagaagaggaggag
gacgacgaagacgtggagacaaatcaggacagtcccaagaagcacaatggtttgccgggc
cgcagcccctctaagtctaagctcctgtttagcagcacagctgctcagaagctgcggggc
acggacgatgtctataacttgttcttcgtgaacaactactggtacgtcttctttcgtctt
cactacatcctctgttctcgtttgctgcggatttatgggcaagcagagaagcagatcgag
gaggacgcccatgagcgagagtgggaaagcgaaatgttggggttgaaaaaggagaagaat
gaaaacccagcgatccagttaaagatgaaggagccaatggaggttgatgtagacgagtat
tattctgtgtttctggaaatggtgcgaaatctgttggatggaaacatggagccggctcag
tacgaggactccctgagggaaatgtttacgatccacgcctacattgccttcaccttggac
aaactgatccagagcattgtccggcagctccagcaccttgttacagatgacgtctgtgca
cgtgtgactgacatgtacctgagtgagagtgccaataaagccacaggtggcacagtgtca
acgcagacatccagggctgctgccgaggggacctaccagcacagagcagagcagctcatg
tcagacgagaactgcttcaagctgatgtttatgaagaatcgagggtctgtcagtctggca
ttggagctgctggatacagaggaagagaactccgatgagcccgctgacgcagaaaaatgg
tcagattatgtgagcaggtactctacatccccagagctccgtgagcatttggcccagaaa
ccagttttcctccccaggaatttgaggcggataagaaagtgccagagagggtgggagcag
ctgcagcaggagaggatcactaaaggctcctcagacaagccgcaggacagcaacagtgat
ctgaagatgaagtgcatgttcaaactgaactcctacaagatggtttatgtctgcaagtcc
gaggactacatgtacagacacacggcgctgacccgagctaaccagtcccaccagcgggtg
cacacacgcctccacaagcgctttcacacctggttggacaactgggctaagactcacgtg
acgagcgaaatgtctgccaacactcagaaatggctgaggggagaaggacaagagggactg
ttgtcgtgcaccaccacctgctgccctcaggtcctccattatctcaacattaccaagtac
cgggtgaagtacaggacactgtag
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