Nematolebias whitei (Rio pearlfish): 119424387
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Entry
119424387 CDS
T08042
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nwh03021
]
119424387 (chd1)
03036 Chromosome and associated proteins [BR:
nwh03036
]
119424387 (chd1)
Transcription machinery [BR:
nwh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
119424387 (chd1)
Chromosome and associated proteins [BR:
nwh03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
119424387 (chd1)
SLIK complex
119424387 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
119424387
NCBI-ProteinID:
XP_037547787
LinkDB
All DBs
Position
18:complement(18073658..18112047)
Genome browser
AA seq
1785 aa
AA seq
DB search
MAGRSEDESVSNSSGESSNSDDESGSRSGSASGSSSGSSSSSSSSSSRSGSSDSGSGSDS
GSQSDSDTEKSNEKAEPQNKSNIDGAEFWKSNPSILAVQRSAMLRKQQQQQQQKQESSNS
GSDEDSSSSDESETSSGSKKRRNSDSSDSGSGSGSGSDSGSDSSAEDNSNETASDYEPSP
KFKRKKPPTKMASRNGKNSVTQRKAPKCSSSEDERIYAKMASAGPRRQATVNVSYKEDEE
LKTDSDDLVEVLGEDVPQPEEDEFETIERVMDCRIGRKRAIGSATTVYAIEADGDPNANF
DPNKEAGEIQYFIKWKNWAHIHNTWETEEALKLQNVRGMKKLDNFKKKEQEKKKWLKMAS
PEDIEYFNCQEELMDDLHSQYQLVERIIGHSNQKSAAGYPDYLCKWQGLPYSECSWEDGA
LIAKKFQKCIDDYMSRNQSKFIPTRDYKLLKQRPRFAPMKKQPAYVGGDGLELRDYQLDG
LNWMAHSWSKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQRE
IFLWAPQMNVVVYLGDINSRNMIRTHEWMHGHSKRLKFNIILTTYEILLKDKSFLGSVNW
ACIGVDEAHRLKNDDSLLYKTMIDFKSNHRLLITGTPLQNSLKELWSLLHFIMLEKFHSW
ELFEEEHGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQKQYYKW
ILTRNYKALSKGTKGSTSGFLNVMMELKKCCNHCYLIKPPDDDESLNKAEALQQLIRSSG
KLVLLDKLLVRLKERGHRVLIFSQMVRMLDILAEYLRCRQFLFQRLDGSIKGEMRKQALD
HFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKRQVN
IYRLVTKSSVEEDIIERAKKKMVLDHLVIQRMDTTGKTVLHTGAAPSSSAPFSKEELSAI
LKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEELLSQFKVANFTVME
EDDLDIDSERSQRSWDDIIPEEQRRRMEEEERQKELEEIYLLPRMRNCAKQISFNSNVSR
LSRNRRYSGSDSDSASDRKRPKKRGRPRTIPRENIKGFTDAEIRRFVKSYKKFGGPLERL
DAIARDAELVDKSEHDLKRLAETVHNGCVRTLRENPCGPEKSSGGRRGKVKGPTFRISGV
QVNAKLVISHEEELAPLHKAIPADPEERKRYMIPCHSKAAHFDIEWGKEDDSSLLIGIYE
YGYGSWEMIKMDPDRNLTHKLLPDDPDKKPQAKQLQARADYLIKLLCKDLAKREAQKQAG
TANSRKRKPRSKKSKALKTTKADEVTKSPSSDLQSDKRSEDEDELDEDDDKEVAQVKISS
RWARADKMVVKEEKEEDNDEEDEQDVFSSVERDVKEKDGKKEKDESCDFKDIKESKEKKE
IVALQTKHRQEEGTDKIEVKTEVHDRIKKASDLSVHKVTNAENMPGSEESEELDQRTFSV
CKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLINIGDHITECLKEYSNPDQIKQWRK
NLWIFVSKFTEFDARKLHKLYKHAIKKRQENAQAMEQNTRHINTQGFKHLDVERLKDSSH
HDDSSRDSYSSDRHQPSARHHDSSSGKERHSFESHKKTPTGESRKRPYSSFSNGKDHRDR
DHYRADNRDRQDRYYDSKHRKLEEVRTGRDHRLDQKDLSHSDHRSYNRYHSDWQTDLRVS
GSGARSPRDQRSPCDSRSPMGYHSPYEYSSDHRSPPEQIWSSRKT
NT seq
5358 nt
NT seq
+upstream
nt +downstream
nt
atggccggacgcagtgaagatgaaagcgtgagcaatagcagtggagaatcaagtaattcc
gatgatgagtccggctcccgttcaggctcggcctccggttccagttcaggttccagttcc
agctcctccagcagcagcagccgatcagggagcagcgactctggaagcggctcagactct
ggcagccagtcagattctgacacggaaaaatcaaacgagaaggccgaaccacaaaataag
tcaaacatcgatggagcagagttctggaagtccaatcccagcatcctagcagtgcaaagg
tctgctatgcttaggaaacaacaacagcagcagcagcagaaacaagagtcttcaaatagt
ggctctgatgaggactcttcaagtagtgatgaatctgaaacatcaagtgggtctaaaaag
agaagaaactctgactcgtcggattctggatcaggctctggctctgggagcgattctgga
tcagattcgtcagcagaagacaacagcaatgaaaccgcatcggattacgagcccagtccc
aaattcaaacgcaaaaagcctccaaccaagatggcttctcgaaatggaaaaaacagcgtc
acccagaggaaagcccccaaatgttcgtcttctgaggatgagcgtatctacgcaaagatg
gcgtctgcggggccacggcggcaggccacagtcaacgttagttacaaggaggacgaggag
ctgaagacggactcggatgatttggtggaggttctgggtgaagatgtcccacagcctgag
gaagatgagtttgaaactatagagagagtaatggactgcaggatagggaggaaaagagct
atagggagtgcaaccactgtatacgccatagaggcagacggggaccccaacgccaacttt
gatcccaataaagaggccggtgagatccaatattttataaagtggaagaactgggcccac
atccataatacgtgggagacagaggaggcactgaagttgcagaatgtcaggggcatgaaa
aaactggacaatttcaagaagaaggagcaagagaaaaagaaatggttaaagatggcctca
ccagaagatatagaatatttcaattgtcaggaagaattgatggacgacctgcactcccag
tatcagcttgtggagcgaataataggacattcaaatcagaagtcagctgctggttaccca
gactacctgtgcaagtggcaggggttaccttattctgaatgtagctgggaagatggtgct
ctgatcgccaagaagttccagaagtgcatcgatgactatatgagcagaaatcagtctaaa
ttcattccaactagagattacaagctgttgaaacagaggcccaggttcgcacccatgaag
aagcagccagcttacgtaggaggtgatggactggagctcagagactaccagctggatggt
ttaaactggatggcccactcctggagcaaaggcaacagctgtatccttgctgacgagatg
ggcctggggaaaaccatccagaccatctccttcctcaactatctgtttcacgagcaccag
ctgtacgggccgttcctgctggtggtgcccctctccacactaacctcctggcagagggaa
atcttcctctgggctccacaaatgaacgttgtggtctacctgggagacatcaacagcagg
aatatgattcgaactcatgagtggatgcatggacacagcaagagactgaagtttaatatc
atcctcaccacatacgagatccttctcaaagataagtcatttttgggcagtgttaactgg
gcctgcattggtgtggatgaagctcaccgactaaaaaatgatgactccctcctctataag
acgatgatcgacttcaagtccaatcacaggctcctaatcactggaacgccacttcagaac
tccctaaaagagctttggtccctgctgcacttcatcatgcttgaaaaatttcactcttgg
gagctctttgaggaggaacacgggaaaggcagggattctggttacactagtctccacaaa
gagctggaaccgttcctgctgcgccgtgtcaagaaggatgtagaaaagtctcttcctgcg
aaagtggagcagatcctccgagtggagatgagcgcgatccagaaacagtattacaaatgg
atcctgaccaggaactacaaggccctcagtaaaggtaccaaaggcagcacgtcgggcttc
ctgaacgtcatgatggagctgaagaagtgttgtaaccactgttacctaatcaagcctcca
gatgatgacgagtctctcaacaaagctgaagctttacagcaactgatccgcagtagtgga
aagctggttcttttggacaaactacttgtgcgtttgaaggagcgaggtcacagagttctc
atcttctcccagatggtgcggatgctcgacattctggctgaatacttgcggtgtaggcag
ttccttttccagagattggacggttccattaaaggggagatgcggaagcaggcgttggat
cattttaatgccgaaggttcagaggacttctgcttcttgttatccacgcgtgcgggtggc
cttggtatcaatctggcatcggctgacacagtggtgatctttgactcggactggaatccc
caaaatgatctgcaggctcaagccagagcccacaggatcggacagaaaagacaggtgaac
atctatcgactggtgactaaaagttcagtggaggaggatatcattgaaagggcaaaaaag
aaaatggtactcgaccatcttgtcattcaaagaatggataccacaggaaaaactgtcctt
catacaggtgcagctccctcaagttcagcgcctttcagcaaggaggagctctctgccatt
ttgaaatttggtgctgaggagcttttcaaagagccagagggtgaagagcaggagcctcag
gaaatggacatcgatgaaatcctcaaaagggccgagaccagggagaacgaccctggacct
tccactgtaggagaagagctgctgtctcagttcaaggttgccaacttcactgtgatggag
gaggacgatctagatatcgactctgagcgaagtcaaaggagctgggatgacatcattcct
gaagagcaacggaggaggatggaggaagaagagcgacaaaaagagctggaagaaatatac
ctattaccacgcatgaggaattgtgccaaacagataagctttaactccaatgtgagtcgg
ctgagcaggaacaggagatattctggttctgatagtgactccgcctcggaccgaaagaga
ccaaaaaaacgaggacgacctcggaccattccacgggaaaatatcaagggctttactgat
gcagagatccgcaggtttgtcaagagctacaagaaatttgggggaccactggagagattg
gatgccattgctcgtgatgctgaacttgtggataagtctgaacacgacctgaaacgcttg
gcagaaactgtccacaatggatgtgtgagaactctgcgtgaaaacccctgtggaccagag
aagtcatcaggaggcaggaggggaaaggtgaaaggtcctacattcagaatttctggcgtc
caggttaatgctaagcttgttatttctcatgaagaagagctggctccgctgcataaggcc
attcctgctgatcccgaggagaggaaaaggtatatgattccgtgccactcgaaggcagca
cacttcgacatcgagtgggggaaggaggacgactccagtcttctcataggaatctatgaa
tacggttatggcagctgggagatgataaagatggacccggaccgaaatctcacacacaag
cttctaccagatgatcccgacaagaagcctcaggccaaacagctccaggccagagctgac
tacctcatcaaattactgtgcaaagacttggccaaaagagaagcacagaaacaagctgga
accgcaaattcacggaagaggaaaccaagaagtaaaaagagcaaagctctaaagacgact
aaggcagacgaggtgacaaagagcccatcttcagatctccagtcagacaagaggtcagaa
gacgaggatgagctcgacgaggacgacgacaaggaggtggcacaggtgaagatatcgagc
agatgggcccgagcagacaagatggtggtgaaggaggagaaagaggaggataatgatgag
gaggacgagcaggacgttttctcatcggtggagagagatgtcaaagaaaaggatggaaag
aaagagaaggatgaaagttgtgactttaaagacataaaagagtccaaagaaaagaaagaa
atcgtggctcttcagacaaaacatagacaagaggagggcaccgacaagattgaagtgaag
accgaggtacacgaccggataaagaaagcctcagacttgtctgtccataaagtaacgaac
gcagaaaacatgccagggtctgaggagtctgaggaactggaccagaggaccttcagtgtg
tgtaaagagaggatgcggccggtgaaagctgccttgaagcagctggacagaccggagaag
ggtctgtcagagcgtgagcagctggaacacaccagacaatgtctcataaacatcggagac
cacatcacagagtgcctgaaggagtactcaaaccctgaccagatcaaacaatggaggaaa
aatctgtggatatttgtttctaaatttactgagtttgatgcgaggaagctgcataaattg
tacaagcacgcgatcaagaaaagacaagagaatgctcaggcaatggagcagaacactaga
catataaacactcaaggctttaaacatcttgatgttgaacggttgaaggacagctctcac
catgacgacagcagcagggacagctacagctccgacaggcatcagccttcagctcgacac
cacgacagcagcagcggtaaagagaggcacagcttcgagtcccacaagaagaccccaacg
ggcgaatccaggaaaaggccctactcctccttcagcaacggcaaagaccaccgggacaga
gaccactatagagcagacaacagggacagacaggacagatattacgacagcaaacacagg
aaactggaggaagtccgtaccggcagagaccatcggctggaccagaaggacctttctcat
tcagaccaccgctcgtacaaccgctaccactcggactggcagacagacctgcgagtgtcg
gggagtggggcccgctccccccgagaccagcgctcaccttgtgactctcgctcacccatg
ggatatcactcgccgtacgaatactcgtcagaccacaggagtccgccggagcagatctgg
agcagccgcaagacatag
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