Nematolebias whitei (Rio pearlfish): 119424733
Help
Entry
119424733 CDS
T08042
Name
(RefSeq) tenascin
KO
K06252
tenascin
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh04510
Focal adhesion
nwh04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119424733
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119424733
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nwh00536
]
119424733
Glycosaminoglycan binding proteins [BR:
nwh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119424733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
EGF_TEN
EGF_Teneurin
Fibrinogen_C
EGF_Tenascin
EGF_2
Fn3_Dep-1_2nd
Pur_ac_phosph_N
fn3_2
DUF4998
hEGF
EGF
NDNF_C
Motif
Other DBs
NCBI-GeneID:
119424733
NCBI-ProteinID:
XP_037548160
LinkDB
All DBs
Position
18:12002271..12051357
Genome browser
AA seq
1719 aa
AA seq
DB search
MGRQRLLSSFFLIVLISLTNAGFVRKILRHRRQTLSPPKEPNITIPSAGHPVVFSHLYNI
NVPASSLCSVDVDAPEGVQIHPKDTVTGHHITEHTLDGENQIIFTHRINIPRQACGCKED
LPGLKALMRRLEMLEGEVSTLRDQCSSEGACRSAQVLGEMRTKPYCNGHGNYSAETCACI
CEPGWKGTNCTELDCPGRCQERGRCVDGKCECLKSFTGKDCEFEICPFDCGAQGHCVGGV
CICSDGFYGEDCSQSQCLNNCLGRGRCENRDCVCDEPWTGLDCSELLCPKDCYDRGHCKN
GTCYCDEGFGGEDCGQHTCPNNCRGNGFCVDGKCICSAGYNGEDCSQLTCLNDCNSRGTC
FNGMCICDSGYQGEDCSQLACLNICNSRGQCINGQCSCDVGFQGDDCSELSCPRNCQLRG
RCVNGQCVCDEGFAGEDCSVHICPSNCYARGECIDGRCVCHAGFAGEDCSDLSCPNNCQS
QGRCIDGQCVCDEGFSGVDCSQKACPNDCLALGHCHEGKCVCQEGYTGEDCSVLTCPENC
NKRGRCVNGRCTCDSGYEGESCAELSCINSCQDRGRCVDGQCICEEGYIGEDCSEVSPPK
DLKIGEVSTDTVDLSWDNKMLVTEYLVTYVPTSPGGLLMEFIVPGDQTAASVKELEPGIE
YLINVYAILSNKKSIPVSARVATELPQPEGLRFKSVKETSVEVMWDQLDISFDAWEIHFR
NTKEENGKVVNTVQSAENQYFQSGLGPGQEYEVSINIIKNNTRGPQTSKTVKTKIDGPRQ
MEVKDVTDSSVLVSWYLPVAPSDRVSMFYMPSSDQSNQTMVDISPLDKQYSIDSLRPDTK
YYVAIISRLGDASSDPVNTTFTTALDAPKGLQAVAQTDDSITLEWINSQADAKNYRVKYS
PISGTAHGEEVFPRGPGYTTQGTIMGLKPGTEYGIGVTAVKNERESLPATANAATDLDPP
RGFEKVKSTETSLTLTWQKPQAKVGRYRLVYTSRDGQAKEVEIPVTETTYVLSSLTPGMN
YTFNLTSERGQRRSRPVSLSASTVEQKPAIHNLTISDIAWNGFTASWSPTGGDFDSFIIE
VTNMENFAESQNLTLSGNALSLGISGLNPNTSYMVGLYGMHQSSFLEPLYIEATTEAEPE
VEHLFVSDITADSFRLSWAADEDLFDRFVIKVRDTKRLAHPQEYNVHGNKRTKVITGLMS
GTEYDIELYGVTMDQRSQPITGLAQTGLSAPRGLHFSEVTDSTAIVHWSSPHFTVDNYRI
TYVPFEGGSPLIVTADGSVSETLLVDMVPGKSYQVTVSALKGLEESEPSTGTVTTALDSP
QGVTAVNVTDTSALLRWQPSVATVHQYVITYSSDSVSPVVEYVSGHTVEFEMSSLVPGSH
YTVGVNGMKEAQKSASAFTEFMTDVDPPRDLAAVNIQSDSATLTWKPPHAAVTGYMLTFS
SADGEIREVMLSPTASSYSMSQLSGSTEYDVRLQSVAALKRSRFVTTTFSTIGQLFAQPL
DCAQIYLNGETTSGLYTIFIGGEERQPVQVYCDMTTDGGGWTVFLRRQNGKVEFFRNWKN
YTAGFGNMNDEFWLGLSNLYKMTSLGFYELRVDLKDKEESAYALYDKFTLGEPRTRYKLY
LGVYSGTAGDSMTYHHGRPFSTYDNDNDIAVTNCALSYKGAFWYKNCHRVNLMGKYGDNS
HSKGINWFHWKGHEHSIDFAEMKIRPSNFKNFESRKQQS
NT seq
5160 nt
NT seq
+upstream
nt +downstream
nt
atgggcagacagcgccttctgagcagcttttttctgattgtcctgattagtttaacaaat
gctggatttgtcagaaaaatcctgcgacatcgacgacagactttgtcgcctcctaaagaa
cctaacatcaccatccccagtgctggacaccctgttgttttcagccacttatataacatc
aatgtacctgccagttccctgtgctccgtggatgtggatgcaccagaaggcgttcagatc
catcccaaggacacagtaacaggccaccacatcactgaacacacacttgatggagagaac
cagatcatcttcacccatcgcatcaacataccccgacaggcctgtggctgcaaggaagac
ctgcctggtctgaaggctctcatgcgtcgattagaaatgcttgaaggagaagtttcaacc
ttgagggatcagtgcagcagtgaaggggcctgccgaagtgcacaagttttgggagaaatg
agaacaaaaccctactgcaatggccatggaaactacagtgctgaaacgtgtgcttgcata
tgtgagcctggttggaagggcaccaactgcactgagctcgattgtcctggtagatgccag
gaacgaggccgctgtgttgacggaaaatgtgagtgcttgaagagctttaccggaaaagac
tgcgagttcgaaatctgcccttttgactgtggagcccaaggccactgtgtgggtggtgtt
tgtatttgttcagatgggttttatggagaagactgctcacaaagtcagtgcttgaacaac
tgcttgggccgtggtcgctgcgaaaacagagactgcgtatgtgatgaaccttggactggc
ttggactgctctgaactcctctgccccaaagactgttatgaccgtggacactgcaagaat
ggcacatgctactgtgatgagggctttggcggagaggactgtgggcagcacacctgcccc
aacaactgcaggggcaatggtttctgtgttgatggtaaatgcatttgctctgcagggtac
aatggcgaagactgctctcagctcacctgcctcaacgactgtaacagtagaggcacatgc
ttcaatggaatgtgcatttgtgactcaggctatcaaggtgaagactgcagccagttggca
tgtctaaacatctgcaacagcagaggtcagtgcataaacggacagtgttcgtgtgatgtt
ggcttccagggagatgactgctccgagctttcctgtcccaggaactgccagctgagggga
cgctgtgttaacggacaatgtgtatgtgatgaaggctttgccggcgaagactgcagtgtt
cacatctgcccctcaaactgctatgcccgtggggagtgcatcgacggacgctgtgtgtgt
cacgcaggctttgctggtgaagactgcagtgatttaagctgtcccaacaactgccaaagt
caaggtcgttgtatcgatgggcagtgtgtctgtgatgaaggattcagtggagtggactgt
agtcagaaagcttgtccaaatgactgcctggcactgggtcactgtcatgagggtaaatgt
gtctgtcaagaaggctacactggagaggattgctctgtcctcacatgtccagagaactgc
aacaaaagggggcgttgtgtcaacgggaggtgcacctgtgacagcggatatgaaggagag
agctgtgcagagctgagttgcattaacagctgccaagacagaggtcgctgtgtggacggt
cagtgcatctgtgaggagggctacattggggaggactgctcagaagtgtcacctccaaag
gacttaaagattggtgaggtcagcacagacactgtggacctatcctgggacaacaagatg
ctggtcacagaataccttgtcacatatgtgcccaccagtcctgggggtcttttaatggaa
ttcattgtgcctggagaccaaacagccgcctctgttaaagagcttgaacctggcattgag
tacctgatcaatgtctacgctatcctgagcaacaaaaagagcattcctgtcagtgcaaga
gtggctacagagcttccacagccagaaggtttgagatttaaatcagtgaaggagacctct
gtagaggttatgtgggaccaacttgacatctcctttgatgcctgggagatccatttccga
aacacgaaagaagaaaatggaaaagtcgtcaatactgttcagtccgctgaaaaccaatac
ttccagtctgggctaggaccaggtcaggagtatgaggtctccatcaacatcatcaagaac
aacaccagaggaccccaaacatccaaaacagtcaaaaccaaaatcgatggcccccggcag
atggaggtgaaggatgtcacagactcctcggttttggtcagctggtatcttcctgtggcc
ccctctgacagagtcagcatgttttacatgccaagctcagaccaatcaaaccaaaccatg
gtggatatttccccacttgacaaacagtacagcattgatagtctgaggccagataccaag
tactatgtggctatcatttcaagactgggagatgcctcgagtgaccctgtcaacaccaca
tttacaacagcactggatgcccccaagggcctgcaggctgtggctcaaacagatgatagc
atcactttagagtggatcaacagtcaggctgatgccaaaaactatcgagtgaaatacagc
cccatctctggcaccgctcatggggaggaggtgttccctagagggccgggatacaccaca
caggggaccatcatggggctgaagccagggacagagtatgggatcggagtgacagctgta
aagaatgaaagagagagcttacctgcgacagcgaacgcagcaactgatctggatcctccc
agaggttttgaaaaagttaagtccacagagacatcactcactttgacgtggcaaaaacct
caggctaaagtcggtcggtacagactggtgtacacctccagagatggtcaggccaaggag
gtcgagatcccagtcacagaaactacatatgtcttgtccagtctgactcctggaatgaac
tacacctttaatttgacttcagagaggggacaaaggagaagcagacccgtctccctgtct
gcatccacagtggagcagaagccagcgatacataacctcaccatctctgacattgcttgg
aatgggttcactgcatcctggagtcccacagggggggactttgacagttttatcattgag
gtaacaaacatggagaatttcgcagagagtcagaacctcactttatctggaaacgctttg
agcctaggcatctctggcttgaatcccaacaccagctacatggttggtctgtatgggatg
catcagagctccttccttgagcccctgtacattgaagccaccacagaggctgagccggag
gtggagcatctcttcgtttcagatatcacagctgacagtttccgcctgtcatgggcagct
gatgaagacctgtttgacagatttgtcatcaaagtaagagacactaaaagattagctcat
cctcaggagtataatgtccatggcaacaagagaacaaaggttatcaccggcctcatgagt
ggtactgagtatgacatcgagctttatggtgtcacaatggaccagcgctcccaacctatt
acagggcttgctcaaacaggtctaagcgctccaagaggacttcatttctctgaagtgacg
gactccacagccatagttcactggtccagtccacactttacagtggataactaccgcatc
acctatgtgccttttgaaggaggaagcccattgatcgtgactgcagatggcagcgtgtct
gagactttgctggttgatatggtgcctggaaagagctaccaagtcactgtgagcgcactg
aaaggtctggaggagagtgagcccagcacaggcactgtaaccacagctttggacagccca
cagggtgtgactgcagttaatgtcactgatacgtcagctcttttgcgttggcaaccatct
gtagccactgtgcatcagtatgtcatcacctatagctctgactcagtgtctccagtggtg
gagtatgtgtctgggcacacagtggagtttgagatgagttccctggttccaggatcacat
tacacagttggtgttaacggaatgaaagaagctcagaagagtgcatctgcttttactgaa
ttcatgacagatgtagatcctcctcgtgacctggcagctgttaacattcaaagtgacagt
gccactctgacctggaaaccacctcatgctgcagtcactggttacatgctcaccttctcc
tcagctgatggtgaaatcagggaagtaatgctaagcccaacagcatcctcgtacagcatg
tctcagctgagcggttccaccgagtatgatgtccgcctgcagtctgttgctgcgctaaag
aggagtcgatttgttacaaccaccttttccaccattggacagctgtttgcacagccactg
gactgtgctcagatttacctgaatggagagacgacctccggtctttacaccatctttatt
ggaggagaggaaagacagcctgttcaggtttactgcgacatgacaacagacggcggagga
tggacagtttttctcagacgtcagaatggaaaggtggaattctttagaaactggaaaaac
tacacagctggcttcggtaacatgaacgatgagttctggctgggtctttccaacctctac
aaaatgacatcattgggattttatgagctgagagtggacctaaaagacaaggaggagtca
gcctatgctttgtatgacaaatttacccttggagagccaagaacacgctataaactctac
ttaggagtgtatagtggaactgcaggtgactccatgacgtaccaccatggtcggcccttc
tccacctatgataacgacaatgatattgctgtgacaaactgtgccttgtcctacaaagga
gccttttggtataaaaactgccatcgagtcaacctcatggggaaatatggtgacaacagc
cacagtaagggaattaactggttccactggaaaggccacgaacactcaattgattttgca
gaaatgaagattaggccatctaacttcaaaaactttgagagccgaaaacagcaatcgtag
DBGET
integrated database retrieval system
