Nematolebias whitei (Rio pearlfish): 119424742
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Entry
119424742 CDS
T08042
Symbol
nup54
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119424742 (nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwh03019
]
119424742 (nup54)
Messenger RNA biogenesis [BR:
nwh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
119424742 (nup54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
Motif
Other DBs
NCBI-GeneID:
119424742
NCBI-ProteinID:
XP_037548169
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Position
18:23897543..23907622
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AA seq
567 aa
AA seq
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MAFNFGGAVGNAAANTSGFSFASFGAKTTAPATFGFNPTATTTTASSGFGTLTAPSFGAA
TTTSAPATGFSFGSTNTGTFGGFGTTTTSAVAPGSTFSFATPSNTTGGLFGATQNKGFGF
SSGLGTGTTTGTSGFGTGLGTTGLGGFGGFNIQPTQQQGGLFGQQPQLQGQTQPTQLYQQ
VTALSAPTLLGDERDSILAKWNQLQAYWGTGKGYYSNNNQPVDFTQENPFCRFKAVGYSC
IPVSKDEDGLVVLMLNKKEADVRAQQQQLVESLHKVLGSNQTLTVNVEGVKSLPNDQTEV
IIYVVERSPNGTSKRIPASTLFSCLEQANIKVQLTQIGVVMSVTRTELTPAQLKQLLQNA
PAGVDPIIWEQAKVDNPEPERLIPVPMVGFKELLRRLQIQEQMTKQHQTRVDIISNDISE
LQKNQATTVAKIAQYKRKLMDLSHRVLQVLIKQEIQRKSGYAIQVDEEHLRVQLDTIQSE
LNAPTQFKGRLNELMSQIRMQNHFGAVRSEERYSVDADLLREIKQHLKQQQDGLSHLIGV
IKEDLEDIKLIEHGLSDGGHMRGGMLS
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcaattttggcggcgctgtgggtaacgcagcagcaaacacgtccgggttttcg
tttgcctcatttggtgccaagacaacagcaccagcaacgtttggtttcaacccgacagcc
accaccaccaccgcctcttcagggttcggcactttaacagctcctagtttcggagcagcc
acaaccacctctgcaccagccactgggtttagttttggctccaccaacaccggaacattt
ggtggctttgggacaactacaacaagtgctgtagcaccagggtcaacattcagctttgct
accccttcgaatacaacaggaggcctgtttggtgccacacagaacaaaggatttggattt
tcatcaggccttgggactggaaccaccactggaacatcaggctttggaaccggattagga
acaaccggccttggtgggtttggaggttttaacatccagccgacgcaacaacaaggaggc
ttgtttggtcagcagcctcagctccagggtcagactcagcccacccagctgtaccagcag
gtcaccgctctgtcagccccgaccctgttaggagatgaacgggactccattcttgccaag
tggaaccagctgcaggcctactggggcacaggaaagggctactacagcaacaataaccag
cctgtggattttactcaggagaaccctttttgcaggttcaaggctgtggggtatagctgc
atcccagtaagtaaggatgaggatggtttggtggtcttgatgctcaataagaaggaggcg
gatgtgagagctcagcagcagcagctggttgagtctcttcataaagtcctgggaagcaac
cagactctaactgtgaatgtggagggtgtcaaatctctgccgaatgaccagacagaggtg
atcatttacgtagtggagcgttcccctaatggcacctccaagaggatcccagcttccacc
ctcttcagctgtctggagcaggccaacattaaggttcaactcacacagattggagtggtc
atgtcagtcacacgcacagaactcacccctgctcagctcaaacagctgctgcagaacgct
cctgcaggagtggatccaatcatctgggagcaggcaaaggtggacaaccctgaacctgag
agattgatccctgtgcccatggttggttttaaagagctgcttcgcagactgcagatccag
gaacagatgactaaacaacaccagactagagtggacatcatctcaaacgacatcagtgag
ctgcagaagaaccaggcgacaactgtggccaagatcgctcagtacaagaggaagctgatg
gatctctcccacagggtgctgcaggtactgatcaaacaggagattcagagaaaaagtggt
tatgcaatccaggtggacgaggagcacctcagggtgcagctggacactattcagtcagaa
ctcaatgcccccacgcaattcaagggccggttgaatgaattgatgtcccagattcgaatg
cagaaccactttggagctgtgagatcagaggagcgctacagcgttgatgcagaccttctc
agagaaatcaaacaacatttgaagcagcagcaggatggcttaagtcacttgatcggcgtc
atcaaagaagacttggaggacatcaaactcattgagcacggactgagcgacggtggccac
atgagaggaggcatgctgagctga
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