Nematolebias whitei (Rio pearlfish): 119424841
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Entry
119424841 CDS
T08042
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119424841 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwh03019
]
119424841 (mtrex)
03041 Spliceosome [BR:
nwh03041
]
119424841 (mtrex)
03009 Ribosome biogenesis [BR:
nwh03009
]
119424841 (mtrex)
03016 Transfer RNA biogenesis [BR:
nwh03016
]
119424841 (mtrex)
Enzymes [BR:
nwh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119424841 (mtrex)
Messenger RNA biogenesis [BR:
nwh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
119424841 (mtrex)
Spliceosome [BR:
nwh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
119424841 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
119424841 (mtrex)
Ribosome biogenesis [BR:
nwh03009
]
Eukaryotic type
Pre-60S particles
Helicases
119424841 (mtrex)
Transfer RNA biogenesis [BR:
nwh03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
119424841 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
119424841
NCBI-ProteinID:
XP_037548274
LinkDB
All DBs
Position
18:complement(22474098..22493598)
Genome browser
AA seq
1034 aa
AA seq
DB search
MADPFDDGLFSVFDDEQQGSASKKIPGSISTETGKAAGKVGSDKDAGPSPRIKREADCDG
GEDVVFGKRPRQETANDLNLAEFMPQVKVEPVETVEGCSHEVALPAEDEYKPLKPRVGKA
AKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFD
EIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTEYR
PTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGESGASSRGGKWDRGRKGG
TRGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNSDDEKRLVEEVFSNA
VDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAM
GINMPARTVLFTSARKFDGKSHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSPAV
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKIKK
LEEQYHTIEIPNEESVVTYFKIRQQLAKLGKEIQEFIHKPKYCLPFLQPGRLVKVKNEDV
DFGWGVVVNFCKKTNVKTSMDSEPLYVVEVLLHCSKESVKDAATEAARPAASGETGEMQV
VPVMLHLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGIKDP
ALKKVIQKVEAFEHRMYTHSLHSDPNLESVYSLCEKKALIAADVRTAKRDLKKARTVLQM
DELKCRKRVLRRLGFASLSDVIEMKGRVACEISSGDELLLTEMVFNGLFNDLTAEQATAL
LSCFVFQENANEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEDSYLSQFKPHLMD
VIYAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggacccgttcgatgacggattgttcagcgtgtttgacgatgaacagcaaggttct
gccagcaaaaagattcccgggagcatctccacagaaacagggaaagctgcaggtaaagtc
ggtagtgacaaagatgcaggtccatctcctcggatcaagagggaggcagactgtgacgga
ggagaggacgtggtgtttgggaagagacctcgacaggagacggctaatgacttaaatctt
gctgaatttatgccccaagtgaaagtggagccagttgaaactgtggaaggatgctcacat
gaggtcgctcttcctgcagaagacgagtataaaccactgaaaccaagagttgggaaagca
gctaaggaatatccgtttatacttgatccctttcagcgtgaggccattttgtgcatcgac
aacaaccagtctgtgcttgtgtctgcacacacgtctgcaggcaaaactgtgtgcgctgaa
tatgccatagcactggctctcagagagaagcagagagtcatcttcaccagcccaatcaag
gccctgtccaaccagaagtacagagagatgtacgaagagttccaggatgtggggctgatg
accggtgacgtcaccatcaaccctactgcctcctgcctcgtcatgacaacagagattttg
aggagcatgttgtatcgaggctctgagatcatgcgagaagtggcgtgggtcgtttttgat
gagatccattatatgagagatgcagagcgtggcgtggtttgggaagagaccatcattctt
cttcctgacaatgtgcactacgttttcctctctgctaccattcccaatgctcgacagttt
gcggagtggatctgccatttacataagcagccttgccatgtggtttacacagaataccgc
cccactccgctgcagcattacatctttccagcagggggagatggactccatctggtggtt
gatgagaatggggacttcagagaagacaatttcaacacagccatgcaggtgctgagagat
gctggggagtctggggccagcagtagaggcggcaagtgggatcgaggacggaaaggaggc
acaagaggtccatcaagtgtatttaagatagtgaagatgattatggagaggaacttccag
ccagtcatcatattcagcttcagtaagaaggaatgtgaggcgtacgctctgcaggtggcc
aaactggacttcaatagcgatgatgagaagcgtctcgtggaagaagtgttcagcaacgca
gtggattgtctttcagatgaggacaaaaaactgcctcaggtcgagcatgtgctgccactg
ttgaagagagggataggaatccatcatggaggcctcctacccatcctgaaagaaaccata
gagattcttttctctgagggcttgcttaaggccttgtttgctacagagacatttgccatg
ggaattaacatgccggctcggactgtgctcttcaccagcgcacgcaaatttgatggcaag
agtcaccgctttattacgtcaggtgaatacatccagatgtctggccgtgctgggaggaga
ggaatggatgataggggaatcgttattttcatggtggatgagaagatgagtccagctgtg
gggaaacagctactgaagggctcagcagacccgttaaacagtgccttccacctgacctac
aacatggtgctcaacctgctgcgtgtggaagagatcaacccagaatacatgcttgagaag
tcgttttaccagttccaacactacagggctctgcctggtgtcgttgagaaaattaagaaa
ttggaggagcagtaccacactattgaaattcctaatgaagagagtgtggtcacttacttt
aagatcaggcagcagctggccaaactgggtaaagaaatccaggagttcatccacaaaccc
aagtactgcctgccgttcctgcagcctgggcgacttgtcaaggtgaaaaatgaggatgtt
gactttggctggggagtcgttgtaaacttttgcaagaagactaacgtaaaaaccagcatg
gactcggagcctctgtatgtggtggaggttttgcttcactgtagtaaggaaagtgtaaaa
gatgcagcaacagaagctgccagacctgcagcttcaggggagactggagaaatgcaggtg
gttccagtgatgctccacctcttaacttcaatcagctctgttcgtctttatatccctaaa
gacctgagaccgttcgacaacagacagctcatgctcaaatccattcaggaggtgcagaaa
cgtttcccagatggtgttcctttactcgaccccatcgatgacatgggcatcaaagacccg
gcgctgaagaaagtgattcagaaagtggaggccttcgagcaccggatgtacacccactcc
ctccacagtgaccccaatttggagtctgtctattctctctgtgagaagaaagctctgatc
gcggcagatgttcgaacggccaaacgagacctgaagaaagctcgaaccgtcctgcagatg
gatgagctgaaatgccggaagagagttctccgaagactcggctttgccagtctttctgac
gtcatcgagatgaaagggcgggtcgcctgtgaaatcagcagtggtgacgagctcctgctg
acagagatggtgttcaacggcctcttcaacgacctgacggctgaacaagccaccgccctc
ttgtcctgcttcgtcttccaggagaacgccaacgagatgccgaagctaacggaacaactg
gctgctcccctcagacagatgcaggagtgtgccaagcgcattgccaaagtgtctgcagac
gccaagctggaggtggatgaagactcttatctgagccagttcaagccccacctgatggac
gtgatctacgcctgggctaacggggccacgtttgctcaaatctgcaaaatgacggacgtc
ttcgagggaagcattatccgctgcatgcgccgtctggaggaagtgctgcgacagatgtgc
tccgcagccaaagccatcggtaacactgagctggagaacaagtttgcagaaggaataacg
aagatcaagagagacatcgtctttgctgccagtctgtatttatag
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