Nematolebias whitei (Rio pearlfish): 119424945
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Entry
119424945 CDS
T08042
Symbol
thbs4b
Name
(RefSeq) thrombospondin-4-B
KO
K04659
thrombospondin 2/3/4/5
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh04145
Phagosome
nwh04510
Focal adhesion
nwh04512
ECM-receptor interaction
nwh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119424945 (thbs4b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
119424945 (thbs4b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
119424945 (thbs4b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119424945 (thbs4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nwh04131
]
119424945 (thbs4b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nwh04147
]
119424945 (thbs4b)
00536 Glycosaminoglycan binding proteins [BR:
nwh00536
]
119424945 (thbs4b)
Membrane trafficking [BR:
nwh04131
]
Endocytosis
Phagocytosis
Opsonins
119424945 (thbs4b)
Exosome [BR:
nwh04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
119424945 (thbs4b)
Exosomal proteins of colorectal cancer cells
119424945 (thbs4b)
Exosomal proteins of bladder cancer cells
119424945 (thbs4b)
Glycosaminoglycan binding proteins [BR:
nwh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119424945 (thbs4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_3
COMP
EGF_CA
EGF_3
EGF_MSP1_1
cEGF
EGF
DUF7630
EGF_LMN_ATRN
Motif
Other DBs
NCBI-GeneID:
119424945
NCBI-ProteinID:
XP_037548394
LinkDB
All DBs
Position
18:22903910..22917483
Genome browser
AA seq
694 aa
AA seq
DB search
MVGWTAFILASQLLLKLCMHVEAQALIYDLLTSPDCLPDLLQGGLAEQGVTEAFILTSFK
LQPKTGTTVFTLYNPRDNSKYFEFTVMGKLNRAVLRYLRSDKRTSSITFNNLVLADGQQH
RLLFHLKGLQQQGPGGVELHLDCRLVETVRDLPAAFRGLPAGYGMVELKTMQAREQESLD
ELKLVVGDSFENVASLQDCHFQQRDSVQTLGVNTKQLSNQMQELTKVINELKEVLIQQVK
ETSFLRNTISECQACGLGGSEVVKPRCTPGVCFRDDMCVETATGVECASCPDGYTGDGFN
CDDVDECQFNPCFPGVKCVNTAPGFRCDACPLGYVGLPVEGVGIVFAQTNKQVCDDVDEC
KGPDNGGCTPNSICHNSMGSFYCGSCKTGFTGDQVKGCEPELSCGNSLTNPCDTNAQCFR
ERDGSISCQCGIGWAGNGYLCGKDTDIDGYPDEKLKCKDPSCKKDNCMFVPNSGQEDADR
DGMGDACDDDADGDGIPNEQDNCRYKPNVDQRNSDRDNHGDACDNCRLVENPDQRDTDSD
GKGDACDDDMDGDGLKNFLDNCQRVQNRDQLDRDGDGVGDACDSCPDIPNPNQSDIDNDL
VGDSCDTNQDSDGDGHQDTKDNCPLVINSSQLDSDKDGLGDECDDDDDNDGIPDILPPGP
DNCRLVPNPEQIDDNNDGIGDICESDFDQDKVID
NT seq
2084 nt
NT seq
+upstream
nt +downstream
nt
atggttgggtggacagcttttattctggcctcacagctgctgttaaaactctgtatgcac
gtggaggcccaggctttgatttatgatctgctcacatcgcccgattgcttgccagacctg
ctgcagggcggtctggccgaacagggggtgactgaggctttcatcctaacctccttcaag
ctgcaacccaaaactggaaccactgtgtttactctgtacaaccccagggacaacagcaaa
tactttgagttcacagtgatggggaagctcaaccgagctgtgttacgttacctgcggagc
gacaagagaacaagctccattactttcaacaacctggtgctggcagatggccagcaacac
cgactgttgttccacctgaaggggctgcagcagcaggggccaggcggggtggagctgcat
ctggactgcaggctggtcgagacggtcagggatcttccggctgccttccgaggtttgcct
gcagggtatggtatggtggagctaaagacgatgcaagccagggagcaggagagtttagac
gagctaaaactggtggtcggggactcgtttgagaacgttgcatcattacaagactgtcat
ttccagcaaagagactcagtccaaactctgggggtcaacacaaagcagctatctaatcaa
atgcaggagttaacaaaggtgataaatgaactgaaggaggtgctcattcagcaggttaag
gaaacctctttccttagaaacaccatctctgagtgtcaggcctgtggtcttggtggtagt
gaggtggtgaaaccaagatgtaccccaggtgtctgtttccgtgacgatatgtgtgttgag
acagcgactggtgttgagtgtgcatcctgtccagacggatacacaggagatggtttcaac
tgtgatgacgtagatgagtgccagtttaacccctgcttccccggagtgaagtgtgtgaac
accgcaccaggcttccgctgtgacgcctgtccactgggctacgtcggcctgccagtcgag
ggcgtaggcattgtgttcgctcagactaacaaacaggtttgtgatgacgttgatgaatgc
aaaggacccgacaatggaggctgtactccgaactcaatctgccacaactctatgggctcc
ttttactgcggcagctgtaagacaggtttcacaggggaccaggtgaagggctgcgagccg
gagctcagctgtggaaacagcctgaccaacccctgtgacaccaacgcccaatgttttcga
gaaagagatggctccatctcttgtcagtgtggaattggctgggccggcaacggatacctg
tgcgggaaggacactgacattgatgggtatccagatgagaaactcaaatgcaaggaccca
agttgtaaaaaggataactgcatgtttgttccaaactctggtcaagaggacgcagacagg
gacggtatgggagacgcctgtgatgacgatgcagatggtgatggtattccaaacgagcag
gataactgtcggtataagcccaacgtggaccagaggaacagtgatagagacaaccacggc
gatgcttgtgacaactgccgcttggtggagaaccctgaccaaagggacactgatagcgat
ggcaaaggggacgcctgcgatgacgacatggatggagatggtctgaagaacttcctggac
aactgccaacgagtccagaacagagaccagctggaccgagatggagatggagtgggagac
gcctgcgacagctgtcctgacatccccaacccaaaccagtctgacatagataacgacctg
gttggagactcctgtgacacaaaccaagacagtgatggtgacggtcaccaggacaccaag
gacaactgtcctctggtgatcaacagctcccagctggacagtgacaaagacgggctggga
gacgagtgtgacgatgacgatgacaacgatgggatcccggatattttaccaccaggacca
gacaactgcaggctggtgccaaaccctgaacagattgatgacaacaatgacggcattgga
gatatttgtgagtcggacttcgaccaggacaaagtgattgacag
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