Nematolebias whitei (Rio pearlfish): 119424959
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Entry
119424959 CDS
T08042
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119424959 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nwh03041
]
119424959 (prpf4)
Spliceosome [BR:
nwh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
119424959 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
EIF3I
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_EML
WD40_MABP1-WDR62_1st
PRP4
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_Vps41
Ge1_WD40
Beta-prop_IFT140_1st
WD_LRWD1
Beta-prop_WDR19_1st
WD40_like
eIF2A
Beta-prop_WDR11_1st
Nbas_N
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
119424959
NCBI-ProteinID:
XP_037548409
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All DBs
Position
18:complement(16461246..16494581)
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AA seq
510 aa
AA seq
DB search
MSDEDESAPVMKRSRIFYGSLEEKERERLSLAMASSVGKGGDAVKAGIKAGNINFSSGET
LEMEERISERQQEVLAEFERRRRARQITVSTDDAEVKAGLRALGEPITLFGEGPADRRER
LRSVLSVVGPDALKKSRKDEERVKRSKDECLQTWYHEGPASLKEARLWLARYSLPLATKR
LEAARAQKDVPDATRTIRQQELHKTLRNLNNFCSQIGDDRPISFCHFSPDSTMLATGSWS
GLCKLWSVPDCSLIRTLRGHNTNIGSIVFRPQASISLDQSDVSLASCAADGTVKLWNLES
DEPVADIEGHSDRVSRVSWHPSGRFLGTTCYDNSWRLWDLEVQEEILHQEGHSKGVHDIS
FHPDGSLAATGGLDAFGRVWDLRTGRCVVFLEGHLKEIYSLHFSPNGHHLATGSGDNTCK
VWELRNRKCLYTVPAHQNLLSSVRFQPTDGHFLLTGAYDNTAKVWSHPGWMPLKTLAGHE
GKVMGVDVSPDGKLIATCSYDRTFKLWLSE
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgaggacgaatctgctccagtcatgaagaggagtcgcattttctacggcagc
ctggaggagaaggagcgagagcgcctcagcttggcaatggcgagcagtgtaggaaaagga
ggtgatgcagtgaaggcggggattaaagcaggaaacatcaacttctcctcaggagagacc
ttggagatggaggagcggatcagtgagaggcagcaagaagtgctggctgagtttgagaga
cgccggcgagcacggcagatcaccgtgtccactgatgacgccgaggttaaggccggcctc
cgagcgttgggagagccaatcactttgttcggggagggaccagctgaccgccgtgagcgg
ctgcgcagcgtgctctctgtcgttggtccagatgcgctgaagaagtccaggaaagacgaa
gagagggtcaagaggtcaaaagatgagtgcctgcagacgtggtaccatgaaggccccgcc
tccctgaaggaagctcgactctggttggctagatactctctgcctctagccacgaagcgt
ctggaagctgcacgcgctcagaaggatgttcctgatgcgaccaggacgatccgccaacag
gagctgcataagaccctgaggaacttgaacaacttctgcagtcagatcggggatgatcga
ccaatcagcttctgccacttcagcccagactctacaatgctggctacaggatcctggagt
ggtctgtgtaagctgtggtccgttcccgactgcagcctgattcgtactcttagaggacac
aacacaaacattggctccatagtcttccgcccacaggccagcatctctctcgaccaatca
gatgtcagtttggcctcctgtgctgctgatgggacggtgaagctgtggaacctggagagc
gatgagccggtggcagacatcgagggtcacagtgatcgcgtgtctcgggtttcctggcat
ccttctggaagattcctgggaacgacctgttatgataactcgtggcgtctgtgggacctg
gaggtccaggaggagatcctccatcaggagggtcacagtaaaggagttcatgacatcagc
ttccatcctgatggttcactggctgcaacaggagggctcgatgcctttggcagagtgtgg
gacttgcgaacgggccgctgtgttgttttcctcgagggccacctgaaggagatctacagt
ctgcacttcagccctaacggccatcacctggcaacaggaagtggtgataacacctgcaag
gtttgggagttgcgcaacaggaagtgtctatacacagtccccgcccaccagaacctgctg
tcgtcagtccgttttcaacccactgatggtcacttcctgttgaccggagcgtacgacaac
acggcgaaggtttggagtcacccaggctggatgccactgaaaacgcttgctggacacgag
gggaaggtgatgggcgtggacgtgtcacctgatgggaaactgattgccacctgctcatac
gaccgaacctttaaactctggctgtcagaatga
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