Nematolebias whitei (Rio pearlfish): 119424990
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Entry
119424990 CDS
T08042
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor, RNA polymerase I, subunit C
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nwh03021
]
119424990 (taf1c)
Transcription machinery [BR:
nwh03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
119424990 (taf1c)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Beta-prop_WDR36-Utp21_1st
DUF7497
Motif
Other DBs
NCBI-GeneID:
119424990
NCBI-ProteinID:
XP_037548441
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All DBs
Position
18:complement(39359183..39368300)
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AA seq
989 aa
AA seq
DB search
MDYQFPQRLFPSFYNNGPPSFSVSSSGEAGGWGSYDGVLPQGGSSSLSSCTFTSKHQVRG
RTWTQTEPVVVPLLTPKTALFCNLTPPDPLDFTEHMQNYYLNYSHDAFGCMSDILGEHFY
FKFGKKYKEKHRRGSVNVWTMRNHIEKLKHKTCHQRFRSSSLGSYCGLLSDVVPDVPPDL
LGSLLHEELTEQRDRLQFSDRTTGGALAFVPLSRSGGCLVCPGGPGLDCLAFHRVALRQH
GVDLQSRASHSFQLKAPVRQISHASLFNDCCVAVRSDYLCGVWRVSETSGPRLLQVVGTR
EAATCVSVSPHVLGEVLVASESGTANLWTVGRGLQKVRAEDTNLYFNAKSSWRWCEFSAH
PRVVLYADRTGSELTDVRAAPGSGITLFRISSASECRSGERLLQSRYLGDVHAFHHLVTT
QYSAYVMDERFTCVPMLKLNHMMKAPPIFCQVVRRSAGSEAADVLFGSQSPQEVTLLQYS
GGRATACFSLGPPRALLRPRDSLRHLPVQIPHRLEVTTNRLSAPAAGLTVIQEDSGSDPG
GGERVCVLQLTEAGDVFYQVLEQNQDSVDQAVPQRDASEPAELRLVGSDTSRDEEAHLKR
SEAADSDSSEDPGGRARRLKLLQLQVFVNDEPDAADPKEAAGGAEEDGGSSCRRRERTPS
ALSSRTLHTWKVWLQKLVRRSGKKKLDSELFTAERKGLLTAPDKETRGAAEEDLREAMRS
CMSSRSLLLHSSDAAPGVEPVPNAVDPEEWTDELSRRLSVSWQGEEAWRAWWHDQLGLNR
KWKTEALKRKRRREKEVRRAAGQQLELSGSFTSSVSYQVELDDFSSSAGWSSVTSQEAWS
DEEERGLLSQLEMVLKSDLPSTPAHTETDSPPPSLTPTPLKEEQQTPSRPRVAPPSSTRH
PETTPSSQRTKRPAKDYLSSLMDTQDDPSQDDPFCPPGAASTSQAHSSQPVPLRSTGSLW
SRDFLTSPQASQRRRAASQTQKKKPRMGF
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggattaccagtttcctcagcggctgtttccctctttttacaacaacggaccgccgtcg
ttttcggtgtcgagcagcggagaagctggaggatggggctcttacgacggagtgttgcct
cagggcggttccagttctctgtccagctgcacgtttacatccaaacatcaggtcagaggg
aggacgtggacccagaccgagcccgtggtggtcccactcttgactcctaaaacagcttta
ttctgtaatttgacgcctccagatccgctggacttcaccgaacatatgcaaaactactac
ttgaactacagccacgatgcgttcgggtgcatgagcgacatcctgggagaacatttttac
tttaagttcggcaaaaagtacaaagagaaacatcgacggggttctgtcaacgtgtggacg
atgagaaaccatatcgagaagttgaaacataaaacgtgtcaccagaggttccgctcctcc
tccctcggctcgtactgcggcctgctgtcggacgtggtgcctgacgtccccccagacctg
ctgggctccctgctgcacgaggagctgacggagcagcgggaccgcctgcagttctccgac
agaaccaccgggggcgctctggcctttgtcccactctcacggagcgggggctgcctcgtg
tgtcctggaggaccgggtctggactgcctcgccttccaccgggtggcgctgcggcagcac
ggtgtggacctccagagcagagcatctcacagcttccagctgaaggctccggtcagacag
atcagccacgcctcgctcttcaacgactgttgcgtggccgtgcgctcggattacctctgt
ggagtctggagggtcagcgaaacgagcggacctcgtctgctgcaggtggtcggcaccaga
gaggccgccacctgcgtgagcgtcagtccgcatgttctaggtgaagttctggtggcgagc
gagagcgggacggcgaacctgtggaccgtcggccgagggctgcagaaggtccgagctgaa
gacaccaacctgtacttcaacgccaaatcgtcgtggcggtggtgcgagttctccgctcat
ccgagggtggttctgtacgcagacagaaccgggtcggagctcactgatgtcagggcggcg
ccgggttctggcatcactctgtttcggatcagcagcgcctctgagtgccggagcggagaa
cgcctccttcagtccaggtacctgggagacgtgcacgccttccatcacctcgtcaccacg
cagtattcggcctacgtcatggacgagcgcttcacgtgcgtgcccatgctgaagttgaac
cacatgatgaaagccccgcccattttctgtcaggtggttcgacgctccgctgggagtgaa
gccgccgacgttctgttcggctcccagagtcctcaggaggtcacgctgcttcagtactca
ggaggacgagccacggcctgcttcagcctcggtcctcctcgggctctcctccgacccaga
gacagtctcagacacctcccggttcagatccctcaccgcctggaggtcaccaccaacaga
ctcagcgcacctgcagctggtctgacggtcatccaggaggactcgggaagtgacccgggc
ggcggggagcgcgtgtgtgtcctgcagctgacggaggccggagatgtcttctatcaggtc
ctggagcagaaccaggactctgtggaccaagctgtgccacagagagacgcctcggagcca
gccgagcttcggctggttgggtcggacacgtcgcgtgacgaggaggcgcatctgaaacgc
tccgaagctgcggactccgactcctccgaggatccaggaggccgagctcggcgcctcaaa
ctgctgcagctgcaggtttttgttaacgacgagcccgatgcagccgatccaaaggaggct
gctggaggagccgaggaggacggagggagctcctgcaggaggagggagcggactccgtcg
gcgctcagcagcagaactctccacacgtggaaggtttggctgcagaagctcgtgcgcagg
agcggcaagaagaagctcgactcggagctcttcacggccgagcgcaaaggtctgctgacg
gctcctgacaaggagacgcgaggagcagcggaggaagaccttagggaggcgatgaggtcg
tgcatgtcgagtcgctcgctgctcctccacagctccgacgccgctcctggcgtggagccc
gtgccaaacgccgtggaccccgaggagtggacggacgagctcagccgccggctgagcgtc
tcctggcagggcgaggaggcgtggagggcgtggtggcacgaccagctgggcctgaacagg
aagtggaagacggaggctctgaagaggaagaggaggcgggagaaggaggtgaggagagcc
gcggggcaacagttggagctgagcgggagcttcacctcctccgtcagctaccaggtggag
ctggacgacttctccagctcggcgggttggtcgtcggtcacgagccaggaggcgtggtca
gacgaggaggagcgggggctgctgtcccagctggagatggttctgaagagtgacctgccc
tcaacgcctgctcacactgagactgactccccaccccccagcctgacccccacgcctctg
aaggaggagcagcaaactcccagcaggcctcgtgtcgcccccccgtcctccaccagacac
cccgagaccacaccgtccagtcagaggacaaaacgtccagccaaggactacctgagctct
ctgatggacacacaggacgacccgtcacaagatgacccgttttgtcctcccggcgccgcc
tcgacctctcaggcccacagctcccagcccgtccccctgagaagtaccggctcgctttgg
tccagagactttctcacgtccccgcaggcgtcgcagcgtcgaagggcggcgtctcaaact
cagaagaagaaacctcggatgggattctga
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