Nematolebias whitei (Rio pearlfish): 119425120
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Entry
119425120 CDS
T08042
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
nwh03009
]
119425120 (ddx55)
Enzymes [BR:
nwh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119425120 (ddx55)
Ribosome biogenesis [BR:
nwh03009
]
Eukaryotic type
Pre-60S particles
Helicases
119425120 (ddx55)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
Helicase_C_2
SLFN-g3_helicase
Cas3-like_C_2
SBF_like
HMUDK_HMUD1
YbjM
SecA_DEAD
Motif
Other DBs
NCBI-GeneID:
119425120
NCBI-ProteinID:
XP_037548575
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All DBs
Position
18:complement(40800759..40808306)
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AA seq
584 aa
AA seq
DB search
MENTTDGTWDSLPVQLNESILETLREMRFIHMTPVQSACIPLFMSNKDVAAEAVTGSGKT
LAFVIPVIELLLKREEKLKKKQVGALVITPTRELAFQISEVMEKFLQKFPQFTQILLIGG
SNPVEDVEKFKDHGGNIVIATPGRLEDMFRRKSEGLDLASAVRSLDVLVLDEADRLLEMG
FEASLNSILSYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGQAAASTQRTPS
RLSNYYTICRSEDKFNNLVAFLRQHKHEKHLVFFSTCACVEYYGRALELLVKKVAVRCIH
GRIKNKRSSIFADFRTLKSGILVCTDVMARGIDIPDVSWVLQYDPPSSASAFVHRCGRTA
RIGNHGNALVFLLPMEESYVNFLSINQKCPLQKMAPVKDVVDVLSKVKTMSLEDRAMFEK
GMKAFVSYVQAYAKHECSLIFKVKDLDFASLARGFALLRLPKMPELRGKSFPDFTEVDTD
SIRYKDKNRERQRKKMLAELKEKDQAGLPKKSFMKNKSWSKQKSKKERRKKLAAKRKHTE
GSDDEDLEELLDDTRLLKKLKKGQISEEDFEQRVTLPKLKHKAS
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atggagaacacgacagacgggacgtgggacagtttacctgtccaacttaacgagagtatt
ttagaaacgctcagagagatgaggttcatccacatgactcctgttcagtctgcttgtatt
ccgctgttcatgagcaacaaggatgtggctgcagaagcggtgaccggaagtgggaaaaca
ttagctttcgttatacctgttatagagctgcttttgaagagagaagaaaaactgaaaaag
aagcaggtcggtgctcttgtgattactcccacaagagaactggctttccaaatcagtgaa
gtgatggagaagttcctgcagaagttcccacagttcacgcagattttattgatcggtggg
agtaaccctgtggaggatgtagagaagttcaaggaccacggggggaacattgtgattgcc
acacctggtcgtctggaggacatgttcaggaggaagtccgagggtctggacttggccagt
gcagtccggagtctggatgttctggttctggatgaggccgacagactgctcgagatgggc
tttgaggccagtctgaacagcatcctgagctacctgcccaaacagagacgcaccggcttg
ttttcagccactcagacgcaggagctggagaagctggtgagggccggcctcagaaaccct
gtgagaatcaccgtcaaggagaagggccaggctgccgcctccacccagagaactccctcc
aggctctccaactactacactatctgtagatccgaggacaagttcaacaacctggtggcc
tttctgaggcagcacaaacacgagaaacatctggtgttcttcagcacctgcgcctgtgtg
gagtactacggtcgagctctggagctgctggtgaagaaggtcgccgtgcgctgcattcac
ggcagaattaaaaacaagcgcagctccatctttgccgacttccggaccctgaagagcggg
atcctggtgtgtacggacgtcatggcccgaggcatcgacatccccgacgtgagctgggtg
ctgcagtacgacccccccagcagcgccagtgcctttgtgcatcgatgtgggcggacggcg
cgtatcggtaaccatggcaacgccctcgtctttctgcttcccatggaggaatcgtacgtc
aacttcctgtccatcaaccagaaatgtccactccagaagatggcgccagtcaaagacgtg
gtggacgtcctgtccaaggtgaagaccatgtccctggaggaccgggccatgtttgaaaaa
ggcatgaaggccttcgtctcgtacgtccaggcctacgccaaacacgagtgcagcctcatc
ttcaaagtcaaagacttggacttcgcctctctggcccgaggcttcgccctcctccgcctg
cccaagatgccggagctgcgagggaaatcgtttcccgacttcacggaggtggacacggac
agcatccgctacaaggacaagaacagagagaggcagaggaagaagatgctggcggagctg
aaggagaaggaccaggcaggacttcctaagaagagcttcatgaagaacaagtcctggtcc
aaacagaagagcaagaaggagcgccgcaaaaagctggcagcaaagaggaaacacacggag
ggctcggacgatgaagacctggaggagcttctggacgacactcgcctcctcaagaagctg
aagaaaggtcagatcagcgaggaggacttcgagcaacgagtaactctccccaagttaaaa
cacaaagcgtcgtag
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